New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5983463	63 (1.140)	5 (0.090)	5/248	NT	7.6%	coding (4108/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	= 5983500	60 (1.120)					coding (4145/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase

ACGATGCCGGGCTGCACGTGAGCATGGACAACTGCCAGAAGTTCATGACCCAGGCACCGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5983314‑5983463 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcGGCAGGCACAGCACCGAGCGGGCGTTGCGCGCCTGCAGCTGTTGGCGGAAGGCCTCCGGGCACTCACTGAGGGCATCGTTGAGCACCAGCGGTTTGCGGGTGCGCATGGTGGTGTTGATGACCGACAACGGTGCCTGGGTCATGAAC  <  NC_002947/5983500‑5983354                                                                                                                                                                                                                                                                                                           ACGATGCCGGGCTGCACGTGAGCATGGACAACTGCCAGAAGTTCATGACCCAGGCACCGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAG                                                                                                                                                      >  6:140262/1‑149                                      GAAGTTCATGACCCAGGCACCGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCACAGCACCGAGCGGGCGTTGCGCGCCTGC                                                                                                                 <  1:92739/149‑1                                                                          CACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCGGCAGGCACAGCACCGAGCGGGCGTTGCGCGCCTGCAGCTGT                                                                                                           >  7:321152/1‑119                                                                          CACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCGGCAGGCACAGCACCGAGCGGGCGTTGCGCGCCTGCAGCTGT                                                                                                           <  8:321152/119‑1                                                                             CACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCGGCAGGCACAGCACCGAGCGGGCGTTGCG                                                                                                                        <  3:215970/103‑1                                                                             CACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCGGCAGGCACAGCACCGAGCGGGCGTTGCG                                                                                                                        >  4:215970/1‑103                                                                                                                                                   CAGCGGCAGGCACAGCACCGAGCGGGCGTTGCGCGCCTGCAGCTGTTGGCGGAAGGCCTCCGGGCACTCACTGAGGGCATCGTTGAGCACCAGCGGTTTGC                                                    >  7:274979/1‑101                                                                                                                                                   CAGCGGCAGGCACAGCACCGAGCGGGCGTTGCGCGCCTGCAGCTGTTGGCGGAAGGCCTCCGGGCACTCACTGAGGGCATCGTTGAGCACCAGCGGTTTGC                                                    <  8:274979/101‑1                                                                                                                                                     GCGGCAGGCACAGCACCGAGCGGGCGTTGCGCGCCTGCAGCTGTTGGCGGAAGGCCTCCGGGCACTCACTGAGGGCATCGTTGAGCACCAGCGGTTTGCGGGTGCGCATGGTGGTGTTGATGACCGACAACGGTGCCTGGGTCATGAAC  <  7:115346/149‑1                                                                                                                                                                                                                                                                                                           ACGATGCCGGGCTGCACGTGAGCATGGACAACTGCCAGAAGTTCATGACCCAGGCACCGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5983314‑5983463 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcGGCAGGCACAGCACCGAGCGGGCGTTGCGCGCCTGCAGCTGTTGGCGGAAGGCCTCCGGGCACTCACTGAGGGCATCGTTGAGCACCAGCGGTTTGCGGGTGCGCATGGTGGTGTTGATGACCGACAACGGTGCCTGGGTCATGAAC  <  NC_002947/5983500‑5983354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.