New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5983463	63 (1.140)	5 (0.090)	5/248	NT	7.6%	coding (4108/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	= 5983500	60 (1.120)					coding (4145/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase

GTTCATGACCCAGGCACCGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATCCTCGCCTCGCAGGCAGCGGTGTCGCTACAAACGGCCAAGTTCTACACGCG  >  NC_002947/5983354‑5983647                                                                                                                                                   |                                                                                                                                                     gTTCATGACCCAGGCACCGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCgc                                                                                                                                                    <  7:115346‑M2/149‑3 (MQ=255)    cATGACCCAGGCACCGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTgg                                                                                                                                                 >  7:102586/1‑149 (MQ=255)     aTGACCCAGGCACCGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGt                                                                                                                                                >  3:91217/1‑149 (MQ=255)      tGACCCAGGCACCGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGt                                                                                                                                                >  4:300546/1‑148 (MQ=255)          ccAGGCACCGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGt                                                                                                                                                >  1:46899/1‑144 (MQ=255)          ccAGGCACCGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGt                                                                                                                                                <  2:46899/144‑1 (MQ=255)           cAGGCACCGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATc                                                                                                                                            >  1:303761/1‑147 (MQ=255)            aGGCACCGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAg                                                                                                                                         >  4:267601/1‑149 (MQ=255)              gCACCGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAggg                                                                                                                                       <  2:212981/149‑1 (MQ=255)                  cGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTg                                                                                                                                   >  5:174290/1‑149 (MQ=255)                       tCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGAt                                                                                                                              <  3:267601/149‑1 (MQ=255)                             atcaACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCAGGAGGCCTTCCGCAAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCt                                                                                                                        >  8:324173/1‑149 (MQ=255)                              tcaACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTg                                                                                                                       <  6:174290/149‑1 (MQ=255)                                   accaccATGCGCACCCGCAAACCGCTGGTGCCCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTg                                                                                                                       <  7:39452/144‑1 (MQ=255)                                   accaccATGCGCACCCGCAAACCGCTGGTGCCCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTg                                                                                                                       >  8:39452/1‑144 (MQ=255)                                      accaTGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCt                                                                                                               <  4:91217/149‑1 (MQ=255)                                          tGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGaa                                                                                                           <  5:94610/149‑1 (MQ=255)                                            cgcACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGaaa                                                                                                          <  4:246567/148‑1 (MQ=255)                                            cgcACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGaaa                                                                                                          <  4:99625/148‑1 (MQ=255)                                                   gCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCgctg                                                                                                                                                  >  7:274979‑M2/1‑97 (MQ=255)                                                   gCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCgctg                                                                                                                                                  <  8:274979‑M2/101‑5 (MQ=255)                                                   gCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTc                                                                                                  >  4:346449/1‑149 (MQ=255)                                                       aCCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGAGCTGATCGGCCTGGTGTACCTGGAAACCCGCCTCGT‑Gc                                                                                             >  1:237940/1‑149 (MQ=255)                                                        ccGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑Gcc                                                                                            >  2:356315/1‑149 (MQ=255)                                                        ccGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑Gcc                                                                                            >  8:312411/1‑149 (MQ=255)                                                         cGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑Gcc                                                                                            >  7:70090/1‑148 (MQ=255)                                                                 cTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGtt                                                                                   <  3:300546/149‑1 (MQ=255)                                                                  tCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTc                                                                                  >  8:110811/1‑149 (MQ=255)                                                                  tCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTc                                                                                  >  1:15055/1‑149 (MQ=255)                                                                  tCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTc                                                                                  >  1:9353/1‑149 (MQ=255)                                                                     aCGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGc                                                                               <  8:115346/149‑1 (MQ=255)                                                                      cGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGt                                                                                                <  1:217952/132‑1 (MQ=255)                                                                      cGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGt                                                                                                >  2:217952/1‑132 (MQ=255)                                                                      cGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCa                                                                              <  7:312411/149‑1 (MQ=255)                                                                      cGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCa                                                                              <  1:356315/149‑1 (MQ=255)                                                                          gCCCTCAGTGACTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGGTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCGGATCGGACGGGTGTAGCGGGAAAACCGCCTCGT‑GCCCAACCTGTACTGCAgg                                                                            >  8:340166/1‑146 (MQ=255)                                                                           cccTCAGGGAGGGCCCGGAGGCCTTCCGCCAACAGCTGCACGCGCGCCACGCCCGCGCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGCTCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTc                                                                           <  2:303761/147‑1 (MQ=255)                                                                            ccTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAgc                                                                        >  3:123403/1‑149 (MQ=255)                                                                             cTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTgg                                                                                                             >  6:269744/1‑112 (MQ=255)                                                                             cTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTgg                                                                                                             <  5:269744/112‑1 (MQ=255)                                                                                agtgagtgCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCt                                                                    >  4:80532/1‑149 (MQ=255)                                                                                  tgagtgCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTgg                                                                  <  7:318934/149‑1 (MQ=255)                                                                                     gtgCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGcc                                                                <  7:324173/148‑1 (MQ=255)                                                                                         ccGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCt                                                           >  5:110751/1‑149 (MQ=255)                                                                                           ggAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTgg                                                         <  8:102586/149‑1 (MQ=255)                                                                                           ggAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTgg                                                         <  3:346449/149‑1 (MQ=255)                                                                                             aGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGa                                                        >  6:289595/1‑148 (MQ=255)                                                                                               gCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTc                                                                                  <  7:337140/120‑1 (MQ=255)                                                                                               gCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTc                                                                                  >  8:337140/1‑120 (MQ=255)                                                                                                 cTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATcc                                                   >  6:1589/1‑149 (MQ=255)                                                                                                 cTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATcc                                                   >  7:111846/1‑149 (MQ=255)                                                                                                     cGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATcctcg                                                <  2:47594/148‑1 (MQ=255)                                                                                                          aCAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCgctgttggcggaaggcctccgggcactcactgagggcatcgttgagcaccagcggtttgcgggtgcgcatggtggtg                                                                         >  7:321152‑M2/1‑42 (MQ=255)                                                                                                          aCAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCgctgttggcggaaggcctccgggcactcactgagggcatcgttgagcaccagcggtttgcgggtgcgcatggtggtg                                                                         <  8:321152‑M2/119‑78 (MQ=255)                                                                                                              cTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCt                                                                    <  2:339682/119‑1 (MQ=255)                                                                                                              cTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCt                                                                    >  1:339682/1‑119 (MQ=255)                                                                                                              cTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATCCTCGCCTCgcagg                                       >  3:306106/1‑148 (MQ=255)                                                                                                                gCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCAgctgttggcggaaggcctccgggcactcactgagggcatcgttgagcaccagcggtttgcgggtgcgcatggtggtgttgatgaccgacaacggtgcctgggtcatgaacttc                                     <  1:92739‑M2/149‑114 (MQ=255)                                                                                                                 cAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATCCTCGCCTCGCAGGCAGc                                   <  6:56253/149‑1 (MQ=255)                                                                                                                  aGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATCCTCGCCTCGCAGGCAGCg                                  <  2:15055/149‑1 (MQ=255)                                                                                                                  aGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATCCTCGCCTCGCAGGCAGCg                                  <  2:9353/149‑1 (MQ=255)                                                                                                                     cgcgcAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGTCGCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATCCTCGCCTCGCAGGCAGCGgt                                <  1:107681/149‑1 (MQ=255)                                                                                                                       cgcAACGCCCGCTCGGTGCTGTGCCTGCCgctgttggcggaaggcctccgggcactcactgagggcatcgttgagcaccagcggtttgcgggtgcgcatggtg                                                                            <  3:215970‑M2/103‑75 (MQ=255)                                                                                                                       cgcAACGCCCGCTCGGTGCTGTGCCTGCCgctgttggcggaaggcctccgggcactcactgagggcatcgttgagcaccagcggtttgcgggtgcgcatggtg                                                                            >  4:215970‑M2/1‑29 (MQ=255)                                                                                                                       cgcAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATCCTCGCCTCGCAGGCAGCGGTGTc                             <  5:289595/149‑1 (MQ=255)                                                                                                                        gcAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATCCTCGCCTCGCAGGCAGCGGTGTCg                            <  1:183112/149‑1 (MQ=255)                                                                                                                               ccGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATCCTCGCCTCGCAGGCAGCGGTGTCGCTACaaa                     >  7:319655/1‑149 (MQ=255)                                                                                                                               ccGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATCCTCGCCTCGCAGGCAGCGGTGTCGCTACaaa                     <  3:80532/149‑1 (MQ=255)                                                                                                                                     ggTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATCCTCGCCTCGCAGGCAGCGGTGTCGCTACAAACGGcc                >  6:57420/1‑148 (MQ=255)                                                                                                                                         cTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATCCTCGCCTCGCAGGCAGCGGTGTCGCTACAAACGGCCAAGtt           <  4:306106/149‑1 (MQ=255)                                                                                                                                          tgtgCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATCCTCGCCTCGCAGGCAGCGGTGTCGCTACAAACGGCCAAGTTc          >  4:14194/1‑149 (MQ=255)                                                                                                                                              cctgccGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATCCTCGCCTCGCAGGCAGCg                                  <  7:47659/121‑1 (MQ=255)                                                                                                                                              cctgccGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATCCTCGCCTCGCAGGCAGCg                                  >  8:47659/1‑121 (MQ=255)                                                                                                                                               ctgccGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTc                                                                                  >  8:279828/1‑72 (MQ=255)                                                                                                                                               ctgccGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTc                                                                                  <  7:279828/72‑1 (MQ=255)                                                                                                                                                 gccGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAAc                                                                                        >  1:3901/1‑64 (MQ=255)                                                                                                                                                 gccGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAAc                                                                                        <  2:3901/64‑1 (MQ=255)                                                                                                                                                  ccGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATCCTCGCCTCGCAGGCAGCGGTGTCGCTACAAACGGCCAAGTTCTACAcgcg  >  5:357959/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GTTCATGACCCAGGCACCGTTGTCGGTCATCAACACCACCATGCGCACCCGCAAACCGCTGGTGCTCAACGATGCCCTCAGTGAGTGCCCGGAGGCCTTCCGCCAACAGCTGCAGGCGCGCAACGCCCGCTCGGTGCTGTGCCTGCCGCTGGTGATCCAGGGCGTGCTGATCGGCCTGGTGTACCTGGAAAACCGCCTCGT‑GCCCAACCTGTTCGGCAGTCAGCGCCTGGCCATGCTGGAAATCCTCGCCTCGCAGGCAGCGGTGTCGCTACAAACGGCCAAGTTCTACACGCG  >  NC_002947/5983354‑5983647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.