| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6087572 | 46 (0.830) | 3 (0.060) | 3/238 | NT | 6.6% | intergenic (+23/‑207) | oruR/aphA | ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase |
| ? | NC_002947 | = 6087636 | 42 (0.820) | intergenic (+87/‑143) | oruR/aphA | ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase | |||||
GCAGTTGCTGGCCGATGAACAGATGCCGATCTACCGGATTGCAGAGACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6087420‑6087572‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGAACAGGTCAACCACGAAAATGGCTGGGCGCCACGCCACTCCAGCGCTGGAAGGCATGC < NC_002947/6087636‑6087498 GCAGTTGCTGGCCGATGAACAGATGCCGATCTACCGGATTGCAGAGACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGC < 5:283988/149‑1GCAGTTGCTGGCCGATGAACAGATGCCGATCTACCGGATTGCAGAGACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGC < 6:24138/149‑1 GTTGCTGGCCGATGAACAGATGCCGATCTACCGGATTGCAGAGACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGG > 5:161711/1‑149 TTGCTGGCCGATGAACAGATGCCGATCTACCGGATTGCAGAGACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGT < 8:261616/149‑1 TTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACG > 8:170194/1‑149 GACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCG < 7:170194/149‑1 ACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGG < 4:55514/149‑1 TTCGCGGGGGAACCCGCTCCTCCAATGGCCACCAGGGCGGCTGGGGTTGGGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGAACAGGTCAACCACGAAAATGGCTGGGCGCCACGCCACTCCAGCGCTGGAAGGCATGC < 4:32265/148‑1 GCAGTTGCTGGCCGATGAACAGATGCCGATCTACCGGATTGCAGAGACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6087420‑6087572‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGAACAGGTCAACCACGAAAATGGCTGGGCGCCACGCCACTCCAGCGCTGGAAGGCATGC < NC_002947/6087636‑6087498 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |