New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6087572	46 (0.830)	3 (0.060)	3/238	NT	6.6%	intergenic (+23/‑207)	oruR/aphA	ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase
	?	NC_002947	= 6087636	42 (0.820)					intergenic (+87/‑143)	oruR/aphA	ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase

GCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAAC  >  NC_002947/6087498‑6087774                                                                                                                                           |                                                                                                                                            gCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCCCAACCCCAGCCGCCCTGGTGGCCATTGGAGGAGCGGGTTCccccgcgaa                                                                                                                                    <  4:32265‑M2/148‑10 (MQ=255)      ccTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑c                                                                                                                              <  3:32265/148‑1 (MQ=255)        ttCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCg                                                                                                                            >  1:8729/1‑148 (MQ=255)          ccAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGa                                                                                                                          <  6:113978/148‑1 (MQ=255)          ccAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGAt                                                                                                                         >  5:113978/1‑149 (MQ=255)            aGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAg                                                                                                                       <  1:43901/149‑1 (MQ=255)             gcgcTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CGGGATAgg                                                                                                                      <  3:124415/149‑1 (MQ=255)               gcTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTc                                                                                                                    <  1:244651/149‑1 (MQ=255)                 tGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTcac                                                                                                                  >  1:66831/1‑149 (MQ=255)                                  cAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCCGGATAGGTCACCACCCATCCGGCCaaa                                                                                                  <  1:15699/149‑1 (MQ=255)                                               ggTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGc                                                                                         >  4:238703/1‑144 (MQ=255)                                               ggTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGc                                                                                         <  3:238703/144‑1 (MQ=255)                                               ggTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCata                                                                                     >  8:157474/1‑148 (MQ=255)                                                gTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCatat                                                                                    <  7:157474/148‑1 (MQ=255)                                                                 tctTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGt                                                                  >  7:268750/1‑149 (MQ=255)                                                                   ttCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGttt                                                                <  8:268750/149‑1 (MQ=255)                                                                     cgcgGGTAAACCCGCTCCTACAGGGGAGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGc                                                              >  1:9557/1‑149 (MQ=255)                                                                       cgGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGcgt                                                            >  3:244817/1‑149 (MQ=255)                                                                        gggTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCat                                                                                      <  7:217568/122‑1 (MQ=255)                                                                        gggTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCat                                                                                      >  8:217568/1‑122 (MQ=255)                                                                               cccGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTcc                                                    >  6:309193/1‑149 (MQ=255)                                                                                ccGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCacccgcgaagaggccagaacaggtcaaccacgaaaatggctgggcgccacgccactccagcgctggaaggcatgccgaaaactggccgt                                                    <  4:55514‑M2/149‑90 (MQ=255)                                                                                ccGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCg                                                                                                        >  8:49406/1‑96 (MQ=255)                                                                                ccGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCg                                                                                                        <  7:49406/96‑1 (MQ=255)                                                                                ccGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTccc                                                   <  2:66831/149‑1 (MQ=255)                                                                                ccGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTcc                                                    >  6:365476/1‑148 (MQ=255)                                                                                 cGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCacccgcgaagaggccagaacaggtcaaccacgaaaatggctgggcgccacgccactccagcgctggaaggcatgccgaaaactggccgtc                                                   <  7:170194‑M2/149‑91 (MQ=255)                                                                                 cGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTcccc                                                  <  2:8729/149‑1 (MQ=255)                                                                                        aCAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTCCTGa                                            >  7:316472/1‑148 (MQ=255)                                                                                              gCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGccc                                     <  2:9557/149‑1 (MQ=255)                                                                                               cGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCacccgcgaagaggccagaacaggtcaaccacgaaaatggctgggcgccacgccactccagcgctggaaggcatgccgaaaactggccgtctcactgaaccccaa                                     >  8:170194‑M2/1‑45 (MQ=255)                                                                                                 tCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGcc                                                                                        <  1:107997/95‑1 (MQ=255)                                                                                                 tCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGcc                                                                                        >  2:107997/1‑95 (MQ=255)                                                                                                  cacaACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGct                                                                                        >  5:314718/1‑93 (MQ=255)                                                                                                  cacaACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGct                                                                                        <  6:314718/94‑2 (MQ=255)                                                                                                     aaCCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACaa                              >  3:237391/1‑149 (MQ=255)                                                                                                      agcccTGACGCCCTTGTGTCCATTGTAGGAGCGGGTTCACCCGCGAAAAGT‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAAt                             <  8:316472/147‑1 (MQ=255)                                                                                                        cccTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGc                                                                                         <  5:109111/87‑1 (MQ=255)                                                                                                        cccTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGc                                                                                         >  6:109111/1‑87 (MQ=255)                                                                                                           tGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCg                                                                                                        <  2:286586/69‑1 (MQ=255)                                                                                                                          cATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCAcc         >  1:87762/1‑149 (MQ=255)                                                                                                                               ttttcgCGGGTGAACCCGCGAAAAGC‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGCCAATGGACCCACGCCAGTCCCACCGgaga    >  3:52390/6‑149 (MQ=255)                                                                                                                               tAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGgag     <  5:365476/148‑1 (MQ=255)                                                                                                                                aGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGaa   >  4:218184/1‑149 (MQ=255)                                                                                                                                 ggAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGaac  <  5:309193/149‑1 (MQ=255)                                                                                                                                 ggAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGaa   <  4:237391/148‑1 (MQ=255)                                                                                                                                  gAGCGGGTTGACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGaac  >  7:82984/1‑148 (MQ=255)                                                                                                                                       ggTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCatat                                                                                    >  6:264381/1‑61 (MQ=255)                                                                                                                                       ggTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCatat                                                                                    <  5:264381/61‑1 (MQ=255)                                                                                                                                           |                                                                                                                                            GCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAAC  >  NC_002947/6087498‑6087774

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.