New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6087572	46 (0.830)	3 (0.060)	3/238	NT	6.6%	intergenic (+23/‑207)	oruR/aphA	ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase
	?	NC_002947	= 6087636	42 (0.820)					intergenic (+87/‑143)	oruR/aphA	ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase

TTGCTGGCCGATGAACAGATGCCGATCTACCGGATTGCAGAGACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGT  >  NC_002947/6087424‑6087716                                                                                                                                                     |                                                                                                                                                   ttGCTGGCCGATGAACAGATGCCGATCTACCGGATTGCAGAGACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGT                                                                                                                                                    <  8:261616‑M1/149‑1 (MQ=255)     tGGCCGATGAACAGATGCCGATCTACCGGATTGCAGAGACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAAc                                                                                                                                                >  2:43901/1‑149 (MQ=255)       gCCGATGAACAGATGCCGATCTACCGGATTGCAGAGACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAAccc                                                                                                                                              >  2:357618/1‑149 (MQ=255)       gCCGATGAACAGATGCCGATCTACCGGATTGCAGAGACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAAcc                                                                                                                                               <  6:15006/148‑1 (MQ=255)                 aGATGCCGATCTACCGGATTGCAGAGACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTc                                                                                                                                          >  8:191526/1‑143 (MQ=255)                 aGATGCCGATCTACCGGATTGCAGAGACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTc                                                                                                                                          <  7:191526/143‑1 (MQ=255)                   aTGCCGATCTACCGGATTGCAGAGACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAgg‑g                                                                                                                                 <  8:76108/149‑1 (MQ=255)                    tGCCGATCTACCGGATTGCAGAGACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAgg‑gg                                                                                                                                >  6:331020/1‑149 (MQ=255)                     gCCGATCTACCGGATTGCAGAGACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGc                                                                                                                               >  4:124415/1‑149 (MQ=255)                      ccGATCTACCGGATTGCAGAGACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCg                                                                                                                              >  2:134367/1‑149 (MQ=255)                                 gATTGCAGAGACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCt                                                                                                                   <  5:331020/149‑1 (MQ=255)                                       agagACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCt                                                                                                                   <  7:219670/143‑1 (MQ=255)                                       agagACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCt                                                                                                                   >  8:219670/1‑143 (MQ=255)                                       agagACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGcc                                                                                                             >  2:69554/1‑149 (MQ=255)                                             tttGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCtggtg                                                                                                       >  1:31975/1‑149 (MQ=255)                                              ttGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTgaacccgctcctacaatggccaccagggcgtcaggggttgtgacg                                                                                                       >  8:170194‑M1/1‑104 (MQ=255)                                               tGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCtggtg                                                                                                       <  4:27548/147‑1 (MQ=255)                                                   gTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCAtt                                                                                                 >  2:15699/1‑149 (MQ=255)                                                   gTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCAtt                                                                                                 <  2:31975/149‑1 (MQ=255)                                                    ttCAGTGATACTGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCa                                                                                                   <  3:29407/146‑1 (MQ=255)                                                    ttCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACACGCTCCTACAGG‑TGCGTCACAACCCCTGACGCCCTGTTGGACa                                                                                                   >  4:29407/1‑146 (MQ=255)                                                         tGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAg                                                                                             >  1:237506/1‑147 (MQ=255)                                                           agaCGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGc                                                                                         <  1:134367/149‑1 (MQ=255)                                                           agaCGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGc                                                                                         <  2:237506/149‑1 (MQ=255)                                                            gaCGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTgaacccgctcctacaatggccaccagggcgtcaggggttgtgacgcccctgtaggagcg                                                                                         <  7:170194‑M1/149‑60 (MQ=255)                                                             aCGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTgaacccgctcctacaatggccaccagggcgtcaggggttgtgacgcccctgtaggagcgg                                                                                        <  4:55514‑M1/149‑61 (MQ=255)                                                             aCGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCgg                                                                                       <  6:161711/149‑1 (MQ=255)                                                              cGGCCAGTTTTCGGCATGGCTTCCAGCGCTTGAGGGGCGGGGCGCCCAGCCATTTTCGTGGTTGACCTTTTCTGGGCTCTTCGCGGGTAAACCCGCTCCTACCGGCGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCgg                                                                                       <  1:69554/149‑1 (MQ=255)                                                              cGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCggg                                                                                      <  1:357618/149‑1 (MQ=255)                                                               ggCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCggg                                                                                      <  6:327423/148‑1 (MQ=255)                                                               ggCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCgg                                                                                       <  6:306290/147‑1 (MQ=255)                                                               ggCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCgg                                                                                       >  5:306290/1‑147 (MQ=255)                                                                        tCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGAc                                                                                                                >  1:118461/1‑113 (MQ=255)                                                                        tCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGAc                                                                                                                <  6:136401/113‑1 (MQ=255)                                                                        tCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGAc                                                                                                                >  5:136401/1‑113 (MQ=255)                                                                        tCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGAc                                                                                                                <  2:118461/113‑1 (MQ=255)                                                                           gCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCCCAACCCCAGCCGCCCTGGTGGCCATTGGAGGAGCGGGTTCccccgcgaa                                                                          <  4:32265‑M2/148‑10 (MQ=255)                                                                                ccTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑c                                                                    <  3:32265/148‑1 (MQ=255)                                                                                  ttCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCg                                                                  >  1:8729/1‑148 (MQ=255)                                                                                    ccAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGa                                                                <  6:113978/148‑1 (MQ=255)                                                                                    ccAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGAt                                                               >  5:113978/1‑149 (MQ=255)                                                                                      aGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAg                                                             <  1:43901/149‑1 (MQ=255)                                                                                       gcgcTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CGGGATAgg                                                            <  3:124415/149‑1 (MQ=255)                                                                                         gcTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTc                                                          <  1:244651/149‑1 (MQ=255)                                                                                           tGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTcac                                                        >  1:66831/1‑149 (MQ=255)                                                                                                            cAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCCGGATAGGTCACCACCCATCCGGCCaaa                                        <  1:15699/149‑1 (MQ=255)                                                                                                                         ggTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGc                               <  3:238703/144‑1 (MQ=255)                                                                                                                         ggTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGc                               >  4:238703/1‑144 (MQ=255)                                                                                                                         ggTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCata                           >  8:157474/1‑148 (MQ=255)                                                                                                                          gTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCatat                          <  7:157474/148‑1 (MQ=255)                                                                                                                                           tctTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGt        >  7:268750/1‑149 (MQ=255)                                                                                                                                             ttCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGttt      <  8:268750/149‑1 (MQ=255)                                                                                                                                             ttCGCGGGGgaacccgctcctccaatggccaccagggcggctggggttgggacgcccctgtaggagcgggtttacccgcgaagaggccagaacaggtcaaccacgaaaatggctgggcgccacgccactccagcgctggaaggcatgc         <  4:32265‑M1/148‑140 (MQ=255)                                                                                                                                               cgcgGGTAAACCCGCTCCTACAGG‑GGAGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGc    >  1:9557/1‑149 (MQ=255)                                                                                                                                                 cgGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGcgt  >  3:244817/1‑149 (MQ=255)                                                                                                                                                  gggTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCat                            >  8:217568/1‑122 (MQ=255)                                                                                                                                                  gggTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCat                            <  7:217568/122‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TTGCTGGCCGATGAACAGATGCCGATCTACCGGATTGCAGAGACTTTGGGGTTCAGTGAGACGGCCAGTTTTCGGCATGCCTTCCAGCGCTGGAGTGGCGTGGCGCCCAGCCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG‑GGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGG‑CCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGT  >  NC_002947/6087424‑6087716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.