New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6161701 =	25 (0.450)	3 (0.060)	3/248	NT	9.8%	coding (109/312 nt)	PP_5403	hypothetical protein
	?	NC_002947	6161732 =	31 (0.580)					coding (140/312 nt)	PP_5403	hypothetical protein

TCGGGCTGCTGTGGATCACCTTCAAACATGTTGGTTATGCGCCGCTCTTGCTTGAGGTAAGCGATGGTCTGGAAGAAGCAAGGTTCACATAGGTGCACCTCATAGCGCTCTCCGTCATGCAGTGCACCAAAGCCCCAGTGCGCGTGGAGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6161852‑6161701 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACAGCAGCCCGAGGATGACTTCGGCCTCGCTTCCAGG  >  NC_002947/6161732‑6161877                                                                                                                                                                                                                                                                                                            TCGGGCTGCTGTGGATCACCTTCAAACATGTTGGTTATGCGCCGCTCTTGCTTGAGGTAAGCGATGGTCTGGAAGAAGCAAGGTTCACATAGGTGCACCTCATAGCGCTCTCCGTCATGCAGTGCACCAAAGCCCCAGTGCGCGTGGAG                                                                                                                                                       >  5:199964/1‑149                                                                                                             TCTCCGTCATGCAGTGCACCAAAGCCCCAGTGCGCGTGGAGCACTGCATGACGGAGAGCGCTATGAGGCGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTCAAGGT                                            >  4:182080/1‑148                                                                                                                       GCAGTGCACCAAAGCCCCAGTGCGCGTGGAGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGT                                                    <  1:262520/130‑1                                                                                                                       GCAGTGCACCAAAGCCCCAGTGCGCGTGGAGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGT                                                    >  2:262520/1‑130                                                                                                                                                       ACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACAGCAGCCCGAGGATGACTTCGGCCTCGCTTCCAGG  >  2:331717/1‑148                                                                                                                                                                                                                                                                                                            TCGGGCTGCTGTGGATCACCTTCAAACATGTTGGTTATGCGCCGCTCTTGCTTGAGGTAAGCGATGGTCTGGAAGAAGCAAGGTTCACATAGGTGCACCTCATAGCGCTCTCCGTCATGCAGTGCACCAAAGCCCCAGTGCGCGTGGAGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6161852‑6161701 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACAGCAGCCCGAGGATGACTTCGGCCTCGCTTCCAGG  >  NC_002947/6161732‑6161877

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.