New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6161701 =	25 (0.450)	3 (0.060)	3/248	NT	9.8%	coding (109/312 nt)	PP_5403	hypothetical protein
	?	NC_002947	6161732 =	31 (0.580)					coding (140/312 nt)	PP_5403	hypothetical protein

ACTCTGGCGTAATCAATTGTCCCAACGTTGGCAGAGGCTTGATGATGAAAATCACTGGTCGTGTAGAAACGGAAGCGGTGGTCGACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACAGCAGC  >  NC_002947/6161555‑6161848                                                                                                                                                   |                                                                                                                                                    cctggaagcgaggccgaagtcatcctcgggctgctgtggatcaccttcaaacatgttggttatgcgccgctcttgcttgaggtaagcgatggtctggaagaagcaaggttcacataggtgcacctcatagcgctctccgtcatgcaGt                                                                                                                                                    >  2:331717‑M1/147‑148 (MQ=255)               aaTTGTCCCAACGTTGGCAGAGGCTTGATGATGAAAATCACTGGTCGTGTAGAAACGGAAGCGGTGGTCGACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTg                                                                                                                                     >  7:260209/1‑149 (MQ=255)                       cAACGTTGGCAGAGGCTTGATGATGAAAATCACTGGTCGTGTAGAAACGGAAGCGGTGGTCGACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTg                                                                                                                             <  8:260209/149‑1 (MQ=255)                                           accttgaaacatgttggttatgcgccgctcttgcttgaggtaagcgatggtctggaagaagcaaggttcacataggtgcgcctcatagcgctctccgtcatgcaGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGgaga                                                                                                          >  4:182080‑M1/105‑148 (MQ=255)                                                   acatgttggttatgcgccgctcttgcttgaggtaagcgatggtctggaagaagcaaggttcacataggtgcacctcatagcgctctccgtcatgcaGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGc                                                                                                                    <  1:262520‑M1/34‑1 (MQ=255)                                                   acatgttggttatgcgccgctcttgcttgaggtaagcgatggtctggaagaagcaaggttcacataggtgcacctcatagcgctctccgtcatgcaGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGc                                                                                                                    >  2:262520‑M1/97‑130 (MQ=255)                                                                 aGAAACGGAAGCTGTGGTCGACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGt                                                                                                                           <  2:163212/109‑1 (MQ=255)                                                                 aGAAACGGAAGCAGTGGTCGACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGt                                                                                                                           >  1:163212/1‑109 (MQ=255)                                                                       ggAAGCGGTGGTCGACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCtt                                                                             >  7:187156/1‑149 (MQ=255)                                                                           gCGGTGGTCGACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGctt                                                                         >  8:3783/1‑149 (MQ=255)                                                                               tggtCGACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCttcttc                                                                     <  7:3783/149‑1 (MQ=255)                                                                                  tCGACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCttcttc                                                                     >  6:336427/1‑146 (MQ=255)                                                                                    gACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGgaga                                                                                                          >  3:83950/1‑107 (MQ=255)                                                                                    gACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGgaga                                                                                                          <  4:83950/107‑1 (MQ=255)                                                                                          aGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCg                                                           <  5:336427/148‑1 (MQ=255)                                                                                                      tGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTAt                                                                                      <  1:297161/109‑1 (MQ=255)                                                                                                      tGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTAt                                                                                      >  2:297161/1‑109 (MQ=255)                                                                                                         ggCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTcaagcaa                                             >  4:266684/1‑147 (MQ=255)                                                                                                                ccACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAgcggcg                                     >  4:244462/1‑148 (MQ=255)                                                                                                                       tttGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAAcc                              >  6:199964/1‑148 (MQ=255)                                                                                                                          ggAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACa                          >  7:235320/1‑149 (MQ=255)                                                                                                                                   cAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAg                 <  3:266684/149‑1 (MQ=255)                                                                                                                                      tCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGt               >  5:203777/1‑148 (MQ=255)                                                                                                                                        ttCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGAACCTATGTGAACCTTGCTTCTTCCATACCATCGC‑GAACTCAAGGAAGAGCGGCGGCTTAGCAACATGTTTGAATGTGATc           >  6:336607/1‑149 (MQ=255)                                                                                                                                         tCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGt                       >  6:218461/1‑137 (MQ=255)                                                                                                                                         tCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGt                       <  5:218461/137‑1 (MQ=255)                                                                                                                                           aGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATcc          <  8:187156/148‑1 (MQ=255)                                                                                                                                           aGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATCACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCAACGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTATGAAGGTGATCca         >  3:148637/1‑149 (MQ=255)                                                                                                                                            gTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCcac        >  5:63053/1‑149 (MQ=255)                                                                                                                                                  ggTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACagcagc  >  5:236884/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    ACTCTGGCGTAATCAATTGTCCCAACGTTGGCAGAGGCTTGATGATGAAAATCACTGGTCGTGTAGAAACGGAAGCGGTGGTCGACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACAGCAGC  >  NC_002947/6161555‑6161848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.