New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6161701 =	25 (0.450)	3 (0.060)	3/248	NT	9.8%	coding (109/312 nt)	PP_5403	hypothetical protein
	?	NC_002947	6161732 =	31 (0.580)					coding (140/312 nt)	PP_5403	hypothetical protein

TGATGAAAATCACTGGTCGTGTAGAAACGGAAGCGGTGGTCGACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACAGCAGCCCGAGGATGACTTCGGCCTCGCTTCCAGG  >  NC_002947/6161597‑6161877                                                                                                                                        |                                                                                                                                                  accttgaaacatgttggttatgcgccgctcttgcttgaggtaagcgatggtctggaagaagcaaggttcacataggtgcgcctcatagcgctctccgtcatgcaGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGgaga                                                                                                                                       >  4:182080‑M1/105‑148 (MQ=255)         acatgttggttatgcgccgctcttgcttgaggtaagcgatggtctggaagaagcaaggttcacataggtgcacctcatagcgctctccgtcatgcaGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGc                                                                                                                                                 >  2:262520‑M1/97‑130 (MQ=255)         acatgttggttatgcgccgctcttgcttgaggtaagcgatggtctggaagaagcaaggttcacataggtgcacctcatagcgctctccgtcatgcaGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGc                                                                                                                                                 <  1:262520‑M1/34‑1 (MQ=255)                             ggAAGCGGTGGTCGACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCtt                                                                                                          >  7:187156/1‑149 (MQ=255)                                 gCGGTGGTCGACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGctt                                                                                                      >  8:3783/1‑149 (MQ=255)                                     tggtCGACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCttcttc                                                                                                  <  7:3783/149‑1 (MQ=255)                                        tCGACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCttcttc                                                                                                  >  6:336427/1‑146 (MQ=255)                                          gACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGgaga                                                                                                                                       >  3:83950/1‑107 (MQ=255)                                          gACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGgaga                                                                                                                                       <  4:83950/107‑1 (MQ=255)                                                aGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCg                                                                                        <  5:336427/148‑1 (MQ=255)                                                            tGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTAt                                                                                                                   <  1:297161/109‑1 (MQ=255)                                                            tGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTAt                                                                                                                   >  2:297161/1‑109 (MQ=255)                                                               ggCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTcaagcaa                                                                          >  4:266684/1‑147 (MQ=255)                                                                      ccACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAgcggcg                                                                  >  4:244462/1‑148 (MQ=255)                                                                             tttGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAAcc                                                           >  6:199964/1‑148 (MQ=255)                                                                                ggAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACa                                                       >  7:235320/1‑149 (MQ=255)                                                                                         cAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAg                                              <  3:266684/149‑1 (MQ=255)                                                                                            tctccgtcatgcagtgcaccaaagccccagtgcgcgtggagcacTGCATGACGGAGAGCGCTATGAGGCGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTCAAGGt                                            >  4:182080‑M2/45‑148 (MQ=255)                                                                                            tCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGt                                            >  5:203777/1‑148 (MQ=255)                                                                                              ttCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGAACCTATGTGAACCTTGCTTCTTCCATACCATCGC‑GAACTCAAGGAAGAGCGGCGGCTTAGCAACATGTTTGAATGTGATc                                        >  6:336607/1‑149 (MQ=255)                                                                                               tCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGt                                                    <  5:218461/137‑1 (MQ=255)                                                                                               tCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGt                                                    >  6:218461/1‑137 (MQ=255)                                                                                                 aGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATcc                                       <  8:187156/148‑1 (MQ=255)                                                                                                 aGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATCACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCAACGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTATGAAGGTGATCca                                      >  3:148637/1‑149 (MQ=255)                                                                                                  gTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCcac                                     >  5:63053/1‑149 (MQ=255)                                                                                                      gcagtgcaccaaagccccagtgcgcgtggagcacTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGt                                                    <  1:262520‑M2/96‑1 (MQ=255)                                                                                                      gcagtgcaccaaagccccagtgcgcgtggagcacTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGt                                                    >  2:262520‑M2/35‑130 (MQ=255)                                                                                                        ggTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACagcagc                               >  5:236884/1‑149 (MQ=255)                                                                                                            CTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACAGCAGCCCGa                           >  5:199964‑M1/1‑149 (MQ=255)                                                                                                              ccACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACAGCAGCCCGAg                          >  2:132332/1‑148 (MQ=255)                                                                                                               cACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACAGCAGCCCGAgg                         <  6:203777/148‑1 (MQ=255)                                                                                                                aCGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGt                                                    <  5:310209/120‑1 (MQ=255)                                                                                                                aCGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGt                                                    >  6:310209/1‑120 (MQ=255)                                                                                                                aCGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACAGCAGCCCGAGGAt                       <  8:235320/149‑1 (MQ=255)                                                                                                                aCGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACAGCAGCCCGAGGAt                       >  8:62467/1‑149 (MQ=255)                                                                                                                  gcgcACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACAGCAGCCCGAGGATGa                     <  6:63053/149‑1 (MQ=255)                                                                                                                      aCTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACAGCAGCCCGAGGATGACTTc                 >  7:320798/1‑149 (MQ=255)                                                                                                                          gggCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCaa                                                         <  6:72401/105‑1 (MQ=255)                                                                                                                                 ggTGCACTGCATGACGGATAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGtt                                                   <  7:268178/104‑1 (MQ=255)                                                                                                                                 ggTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGtt                                                   >  8:268178/1‑104 (MQ=255)                                                                                                                                      acTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACAGCAGCCCGAGGATGACTTCGGCCTCGCTTCCAgg  >  2:331717‑M2/3‑148 (MQ=255)                                                                                                                                        |                                                                                                                                                  TGATGAAAATCACTGGTCGTGTAGAAACGGAAGCGGTGGTCGACGTGAGCTGCGACGTATGCGGCTCCTCCACACGTTTGGAAACCGGCAGTCTTCAGTATGGGGTGCTCCACGCGCACTGGGGCTTTGGTGCACTGCATGACGGAGAGCGCTATGAGGTGCACCTATGTGAACCTTGCTTCTTCCAGACCATCGCTTACCTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACAGCAGCCCGAGGATGACTTCGGCCTCGCTTCCAGG  >  NC_002947/6161597‑6161877

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.