New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	61251 =	36 (0.650)	5 (0.090)	4/248	NT	13.0%	coding (421/885 nt)	PP_0052	beta‑lactamase domain‑containing protein
	?	NC_002947	61276 =	32 (0.600)					coding (446/885 nt)	PP_0052	beta‑lactamase domain‑containing protein

GGCCATACCGCAATTGGCGCGCACATTACCCAGGTGCAGAAAGTGTTTGGCGCCTTGTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCGACTTCCCCGGGG  >  NC_002947/61104‑61389                                                                                                                                                    |                                                                                                                                            gacggattgagcggtacaaggtgcgggcatcggccccggggaagtcgcagcgggcggtgccatagtcgggcatgaacaaggtgtctccaacgaacaccgcgatctcgccggcatcttcgatcatgaaactcatgcaggcgggtgtgtGc                                                                                                                                            <  8:311041‑M1/2‑1 (MQ=255) gacggattgagcggtacaaggtgcgggcatcggccccggggaagtcgcagcgggcggtgccatagtcgggcatgaacaaggtgtctccaacgaacaccgcgatctcgccggcatcttcgatcatgaaactcatgcacgcgggtgtgtGc                                                                                                                                            <  3:32935‑M1/2‑1 (MQ=255)  acggattgagcggtacaaggtgcgggcatcggccccggggaagtcgcagcgggcggtgccatagtcgggcatgaacaaggtgtctccaacgaacaccgcgatctcgccggcatcttccatcatgaaactcatgcacgcgggagtgtGc                                                                                                                                            <  7:114603‑M1/2‑1 (MQ=255)           cAATTGGCGCGCACATTACCCAGGTGCAGAAAGTGTTTGGCGCCTTGTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑Tg                                                                                                                                 >  3:321431/1‑149 (MQ=255)            aaTTGGCGCGCACATTACCCAGGTGCAGAAAGTGTTTGGCGCCTTGTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGc                                                                                                                                <  1:72101/149‑1 (MQ=255)              ttGGCGCGCACATTACCCAGGTGCAGAAAGTGTTTGGCGCCTTGTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGca                                                                                                                               >  4:171135/1‑148 (MQ=255)                 gcgcgcACATTACCCAGGTGCAGAAAGTGTTTGGCGCCTTGTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGAAGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTCCGT‑TGCACCCg                                                                                                                           >  8:114603/1‑149 (MQ=255)                       acaTTACCCAGGTGCAGAAAGTGTTTGGCGCCTTGTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTggg                                                                                                                     <  5:48811/149‑1 (MQ=255)                         aTTACCCAGGTGCAGAAAGTGTTTGGCGCCTTGTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGca                                                                                                                   >  6:96709/1‑149 (MQ=255)                          ggcatcggccccggggaagtcgcagcgggcggtgccatagtcgggcatgaacaaggtgtctccaacgaacaccgcgatctcgccggcatcttcgatcatgaaactcatgcacgcgggtgtgtGCCCGTGCGT‑TGCACACGCCTGGGcac                                                                                                                  >  7:137451‑M1/123‑149 (MQ=255)                                     cAGAAAGTGTTTGGCGCCTTGTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGt                                                                                                        <  5:88367/148‑1 (MQ=255)                                     cAGAAAGTGTTTGGCGCCTTGTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTg                                                                                                       >  5:46313/1‑149 (MQ=255)                                     cAGAAAGTGTTTGGCGCCTTGTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTg                                                                                                       >  5:51510/1‑149 (MQ=255)                                         aaGTGGTTGGCGCCTTGTTCAACGCAGAGCACGGCTTCGCTCTTGATGGCAGCCAGTTCGATGTGCTTCTCGAAGACGAGGAAGGTTTCATGATTTGGAAACTTCAGTCCCGTGCTT‑TGCAGTCGCCTTGGCACACACGCGGGTGCAt                                                                                                    <  4:191496/148‑1 (MQ=255)                                                     ccTTGTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATc                                                                                       >  6:71645/1‑149 (MQ=255)                                                         gTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGaa                                                                                    <  6:51510/148‑1 (MQ=255)                                                         gTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGaa                                                                                    <  6:46313/148‑1 (MQ=255)                                                         gTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGaa                                                                                    <  5:96709/148‑1 (MQ=255)                                                          ttCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATc                                                                                       <  4:71174/144‑1 (MQ=255)                                                          ttCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGagat                                                                                  >  3:71174/1‑146 (MQ=255)                                                            cAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGAt                                                                                 <  3:171135/148‑1 (MQ=255)                                                                          gCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATcgcg                                                                  <  2:310839/149‑1 (MQ=255)                                                                              cGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGgt                                                                <  4:275658/147‑1 (MQ=255)                                                                                 ccGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCg                                                           >  5:226681/1‑149 (MQ=255)                                                                                   gTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATc                                                                     >  1:41507/1‑137 (MQ=255)                                                                                   gTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATc                                                                     <  2:41507/137‑1 (MQ=255)                                                                                    tGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACTCACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTg                                                        <  4:321431/149‑1 (MQ=255)                                                                                      aTGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGga                                                      <  2:131860/149‑1 (MQ=255)                                                                                       tGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCC‑GGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATAGCGGTGTTCGTTGgaga                                                    >  3:35350/1‑149 (MQ=255)                                                                                              cAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCtt                                              >  8:14773/1‑149 (MQ=255)                                                                                                gTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGt‑t                                                                                                                                  <  8:167865/63‑1 (MQ=255)                                                                                                gTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGt‑t                                                                                                                                  >  7:167865/1‑63 (MQ=255)                                                                                                   cGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTc                                          <  6:160457/148‑1 (MQ=255)                                                                                                                gAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTAt                              <  5:71645/147‑1 (MQ=255)                                                                                                                gAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATgg                            >  7:311041/1‑149 (MQ=255)                                                                                                                         gAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCAccgcccg                   >  4:198833/1‑149 (MQ=255)                                                                                                                              tttCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCg              >  4:32935/1‑149 (MQ=255)                                                                                                                                         gCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCGACTTCCCCggg   >  3:27011/1‑149 (MQ=255)                                                                                                                                         gCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCGACTTCCCCggg   >  3:96665/1‑149 (MQ=255)                                                                                                                                          gcgggtgtgtGCCCAGGCGTGTGCA‑ACGCACGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATcgcg                                                                  <  5:185936‑M1/75‑1 (MQ=255)                                                                                                                                          gcgggtgtgtGCCCAGGCGTGTGCA‑ACGCACGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATcgcg                                                                  >  6:185936‑M1/11‑85 (MQ=255)                                                                                                                                          gcgggtgtgtGCCCAGGCGTGTGCA‑ACGCACGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATcgc                                                                   <  7:210194‑M1/74‑1 (MQ=255)                                                                                                                                          gcgggtgtgtGCCCAGGCGTGTGCA‑ACGCACGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATcgc                                                                   >  8:210194‑M1/11‑84 (MQ=255)                                                                                                                                          cAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCGACTTCCCCgggg  >  1:197529/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                            GGCCATACCGCAATTGGCGCGCACATTACCCAGGTGCAGAAAGTGTTTGGCGCCTTGTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCGACTTCCCCGGGG  >  NC_002947/61104‑61389

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.