New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	61251 =	36 (0.650)	5 (0.090)	4/248	NT	13.0%	coding (421/885 nt)	PP_0052	beta‑lactamase domain‑containing protein
	?	NC_002947	61276 =	32 (0.600)					coding (446/885 nt)	PP_0052	beta‑lactamase domain‑containing protein

ATTACCCAGGTGCAGAAAGTGTTTGGCGCCTTGTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCGACTTCCCCGGGGCCGATGCCCGCACCTTGTACCGCTCAATCCGTC  >  NC_002947/61128‑61422                                                                                                                                                      |                                                                                                                                                   aTTACCCAGGTGCAGAAAGTGTTTGGCGCCTTGTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGca                                                                                                                                                    >  6:96709/1‑149 (MQ=255)  ggcatcggccccggggaagtcgcagcgggcggtgccatagtcgggcatgaacaaggtgtctccaacgaacaccgcgatctcgccggcatcttcgatcatgaaactcatgcacgcgggtgtgtGCCCGTGCGT‑TGCACACGCCTGGGcac                                                                                                                                                   >  7:137451‑M1/123‑149 (MQ=255)             cAGAAAGTGTTTGGCGCCTTGTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGt                                                                                                                                         <  5:88367/148‑1 (MQ=255)             cAGAAAGTGTTTGGCGCCTTGTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTg                                                                                                                                        >  5:46313/1‑149 (MQ=255)             cAGAAAGTGTTTGGCGCCTTGTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTg                                                                                                                                        >  5:51510/1‑149 (MQ=255)                 aaGTGGTTGGCGCCTTGTTCAACGCAGAGCACGGCTTCGCTCTTGATGGCAGCCAGTTCGATGTGCTTCTCGAAGACGAGGAAGGTTTCATGATTTGGAAACTTCAGTCCCGTGCTT‑TGCAGTCGCCTTGGCACACACGCGGGTGCAt                                                                                                                                     <  4:191496/148‑1 (MQ=255)                             ccTTGTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATc                                                                                                                        >  6:71645/1‑149 (MQ=255)                                 gTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGaa                                                                                                                     <  5:96709/148‑1 (MQ=255)                                 gTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGaa                                                                                                                     <  6:46313/148‑1 (MQ=255)                                 gTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGaa                                                                                                                     <  6:51510/148‑1 (MQ=255)                                  ttCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATc                                                                                                                        <  4:71174/144‑1 (MQ=255)                                  ttCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGagat                                                                                                                   >  3:71174/1‑146 (MQ=255)                                    cAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGAt                                                                                                                  <  3:171135/148‑1 (MQ=255)                                                  gCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATcgcg                                                                                                   <  2:310839/149‑1 (MQ=255)                                                      cGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGgt                                                                                                 <  4:275658/147‑1 (MQ=255)                                                         ccGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCg                                                                                            >  5:226681/1‑149 (MQ=255)                                                           gTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATc                                                                                                      >  1:41507/1‑137 (MQ=255)                                                           gTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATc                                                                                                      <  2:41507/137‑1 (MQ=255)                                                            tGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACTCACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTg                                                                                         <  4:321431/149‑1 (MQ=255)                                                              aTGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGga                                                                                       <  2:131860/149‑1 (MQ=255)                                                               tGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCC‑GGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATAGCGGTGTTCGTTGgaga                                                                                     >  3:35350/1‑149 (MQ=255)                                                                      cAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCtt                                                                               >  8:14773/1‑149 (MQ=255)                                                                           cgcgatctcgccggcatcttcgatcatgaaactcatgcacgcgggtgtgtgcccgtgcgttgcacacgcctgggcACACACCcgc                                                                                                                                           <  5:185936‑M2/10‑1 (MQ=255)                                                                           cgcgatctcgccggcatcttcgatcatgaaactcatgcacgcgggtgtgtgcccgtgcgttgcacacgcctgggcACACACCcgc                                                                                                                                           >  6:185936‑M2/76‑85 (MQ=255)                                                                           cGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTc                                                                           <  6:160457/148‑1 (MQ=255)                                                                            gcgatctcgccggcatcttcgatcatgaaactcatgcacgcgggtgtgtgcccgtgcgttgcacacgcctgggcACACACCcgc                                                                                                                                           >  8:210194‑M2/75‑84 (MQ=255)                                                                            gcgatctcgccggcatcttcgatcatgaaactcatgcacgcgggtgtgtgcccgtgcgttgcacacgcctgggcACACACCcgc                                                                                                                                           <  7:210194‑M2/10‑1 (MQ=255)                                                                                        gAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTAt                                                               <  5:71645/147‑1 (MQ=255)                                                                                        gAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATgg                                                             >  7:311041/1‑149 (MQ=255)                                                                                                 gAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCAccgcccg                                                    >  4:198833/1‑149 (MQ=255)                                                                                                      tttCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCg                                               >  4:32935/1‑149 (MQ=255)                                                                                                                 gCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCGACTTCCCCggg                                    >  3:27011/1‑149 (MQ=255)                                                                                                                 gCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCGACTTCCCCggg                                    >  3:96665/1‑149 (MQ=255)                                                                                                                  gcgggtgtgtGCCCAGGCGTGTGCA‑ACGCACGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATcgcg                                                                                                   >  6:185936‑M1/11‑85 (MQ=255)                                                                                                                  gcgggtgtgtGCCCAGGCGTGTGCA‑ACGCACGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATcgcg                                                                                                   <  5:185936‑M1/75‑1 (MQ=255)                                                                                                                  gcgggtgtgtGCCCAGGCGTGTGCA‑ACGCACGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATcgc                                                                                                    >  8:210194‑M1/11‑84 (MQ=255)                                                                                                                  gcgggtgtgtGCCCAGGCGTGTGCA‑ACGCACGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATcgc                                                                                                    <  7:210194‑M1/74‑1 (MQ=255)                                                                                                                  cAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCGACTTCCCCgggg                                   >  1:197529/1‑149 (MQ=255)                                                                                                                           gtgcccaggcgtgtgcaacgcacgggcACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCGACTTCCCCGGGGCCGATGcc                           >  7:137451‑M2/28‑149 (MQ=255)                                                                                                                                   cGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATg                                                              >  8:137701/1‑105 (MQ=255)                                                                                                                                     t‑tGCACACGCC‑GGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATAGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCGACTTCCCCGGGGCCGATGCCCGCACCTTGTAc               <  4:35350/149‑1 (MQ=255)                                                                                                                                          acacGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCGACTTCCCCGGGGCCGATGCCCGCACCTTGTACCGc            >  4:239371/1‑149 (MQ=255)                                                                                                                                            acGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTGGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCGACTTCCCCGGGGCCGATGCCCGCACCTTGTACCGCt           >  2:111367/1‑148 (MQ=255)                                                                                                                                               ccTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCGACTTCCCCGGGGCCGATGCCCGCACCTTGTACCGCTCAAt       <  2:197529/149‑1 (MQ=255)                                                                                                                                                cTGGGCACACACCCGCGTGCATGAGTTTCATGTTCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCGACTTCCCCGGGGCCGATGCCCGCACCTTGTACCGCTCAATc      <  6:144971/149‑1 (MQ=255)                                                                                                                                                    gcACACTCCCGCGTGCATGAGTTTCATGATGGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCGACTTCCCCGGGGCCGATGCCCGCACCTTGTACCGCTCAATCCGt   <  7:114603‑M2/146‑1 (MQ=255)                                                                                                                                                    gcACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCGACTTCCCCGGGGCCGATGCCCGCACCTTGTACCGCTCAATCCGTc  <  3:32935‑M2/147‑1 (MQ=255)                                                                                                                                                    gcACACACCCGCCTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCGACTTCCCCGGGGCCGATGCCCGCACCTTGTACCGCTCAATCCGTc  <  8:311041‑M2/147‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   ATTACCCAGGTGCAGAAAGTGTTTGGCGCCTTGTTCAACGCAGAGCCCGGCTTCGCCCGTGATGGCAGCCAGTTCGATGTGCTGCTCGAAGACGAGGAAGGTTTCCGGATTGGCAACCTGCAGGCCCGTGCGT‑TGCACACGCCTGGGCACACACCCGCGTGCATGAGTTTCATGATCGAAGATGCCGGCGAGATCGCGGTGTTCGTTGGAGACACCTTGTTCATGCCCGACTATGGCACCGCCCGCTGCGACTTCCCCGGGGCCGATGCCCGCACCTTGTACCGCTCAATCCGTC  >  NC_002947/61128‑61422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.