New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	604239 =	46 (0.830)	3 (0.060)	3/248	NT	6.3%	coding (71/501 nt)	nusB	transcription antitermination protein
	?	NC_002947	604287 =	45 (0.840)					coding (119/501 nt)	nusB	transcription antitermination protein

GCTGAAGCTGCCCTGTCCGCACTGGAAATGGTCAGCCTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCGA  >  NC_002947/604110‑604383                                                                                                                                   |                                                                                                                                                   gCTGAAGCTGCCCTGTCCGCACTGGAAATGGTCAGCCTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑aa                                                                                                                                <  5:212849/149‑1 (MQ=255)   tGAAGCTGCCCTGTCCGCACTGGAAATGGTCAGCCTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGc                                                                                                                              >  8:65520/1‑149 (MQ=255)   tGAAGCTGCCCTGTCCGCACTGGAAATGGTCAGCCTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGc                                                                                                                              >  8:107891/1‑149 (MQ=255)     aaGCTGCCCTGTCCGCACTGGAAATGGTCAGCCTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGccc                                                                                                                            >  6:312063/1‑149 (MQ=255)       gCTGCCCTGTCCGCACTGGAAATGGTCAGCCTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCg                                                                                                                           >  1:164598/1‑148 (MQ=255)                tCCGCACTGGAAATGGTCAGCCTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTcg                                                                                                                   <  2:164598/147‑1 (MQ=255)                       tGGAAATGGTCAGCCTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGGCGCG‑AAGCCCGCAAGCTCGCGACCCAgg                                                                                                          >  5:216469/1‑149 (MQ=255)                         gAAATGGTCAGCCTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGcc                                                                                                        >  8:130917/1‑149 (MQ=255)                           aaTGGTCAGCCTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGa                                                                                                                >  1:141676/1‑139 (MQ=255)                             ggatctcgcggaaataggcaccgtcgacatcggtgaaatcgttatccacccggaattgcgcttcgatctcgttcagcgaatgctgggccatgtgccactggtAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCctc                                                                                                     >  3:302732‑M1/103‑149 (MQ=255)                              gatctcgcggaaataggcaccgtcgacatcggtgaaatcgttatccacccggaattgcgcttcgatctcgttcagcgaatgctgggccatgtgccactggtAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCctc                                                                                                     <  2:86184‑M1/47‑1 (MQ=255)                               gTCAGCCTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTAc                                                                                                  <  4:200198/149‑1 (MQ=255)                                tCAGCCTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTAc                                                                                                  >  6:325987/1‑148 (MQ=255)                                  aGCCTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAg                                                                                               <  5:312063/149‑1 (MQ=255)                                    gcggaaataggcaccgtcgacatcggtgaaatcgttatccacccggaattgcgcttcgatctcgttcagcgaatgctgggccatgtgccactggtAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTAcc                                                                                                 >  1:86184‑M1/96‑146 (MQ=255)                                    ccTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGTCGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑TGATGCCGTCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTg                                                                                             <  2:303958/149‑1 (MQ=255)                                      tgctgGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTgg                                                                                            >  1:143322/1‑148 (MQ=255)                                         tgGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGcgcc                                                                                                                                      <  2:243582/104‑1 (MQ=255)                                         tgGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGcgcc                                                                                                                                      >  1:243582/1‑104 (MQ=255)                                           gcgcAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGcaca                                                                                        <  7:107891/147‑1 (MQ=255)                                           gcgcAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATg                                                                                      >  6:63238/1‑149 (MQ=255)                                                           aGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGa                                                                      <  7:65520/149‑1 (MQ=255)                                                            gTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCaa                                                                                                                                           >  3:235059/1‑80 (MQ=255)                                                            gTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCaa                                                                                                                                           <  4:235059/80‑1 (MQ=255)                                                                   gCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGCGGGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAAc                                                                    >  1:69984/1‑144 (MQ=255)                                                                      acgaAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGaa                                                           <  3:37233/149‑1 (MQ=255)                                                                        gaAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCAtt                                                                            <  7:149493/130‑1 (MQ=255)                                                                        gaAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCAtt                                                                            >  8:149493/1‑130 (MQ=255)                                                                        gaAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAgc                                                         >  7:72183/1‑149 (MQ=255)                                                                                  gTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCgg                                              <  7:130917/149‑1 (MQ=255)                                                                                   tttCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCggg                                             >  2:37877/1‑149 (MQ=255)                                                                                          ccGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCGAAAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTAGCTGAACGAGAACCAAGCGCAATT‑CCGGGTGGAt                                        >  1:98523/1‑148 (MQ=255)                                                                                          ccGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTgg                                          <  2:154009/145‑1 (MQ=255)                                                                                          ccGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTgg                                          >  1:154009/1‑145 (MQ=255)                                                                                          ccGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATaa                                      >  6:221007/1‑149 (MQ=255)                                                                                          ccGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGCCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATa                                       >  5:161438/1‑148 (MQ=255)                                                                                              gcgATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGAt                                  <  5:63238/149‑1 (MQ=255)                                                                                                    cAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCAcc                            >  4:186294/1‑149 (MQ=255)                                                                                                      aaaCCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGa                          <  2:69984/149‑1 (MQ=255)                                                                                                         ccTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCTCATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGt                       >  3:177117/1‑149 (MQ=255)                                                                                                             c‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGAt                         >  6:30997/1‑143 (MQ=255)                                                                                                             c‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGAt                         <  5:30997/143‑1 (MQ=255)                                                                                                                gATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATTCCCGGGTGGATAACGATTTCACCGATGTCGACg                  <  1:37877/149‑1 (MQ=255)                                                                                                                    ccGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGc              <  6:216469/148‑1 (MQ=255)                                                                                                                     cGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCt            <  5:221007/149‑1 (MQ=255)                                                                                                                         aaGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTAttt        <  8:72183/149‑1 (MQ=255)                                                                                                                         aaGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTAttt        <  1:68025/149‑1 (MQ=255)                                                                                                                            cccTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGaa                                                                     <  5:176138/86‑1 (MQ=255)                                                                                                                            cccTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGaa                                                                     >  6:176138/1‑86 (MQ=255)                                                                                                                               tCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCa                              <  6:27754/121‑1 (MQ=255)                                                                                                                               tCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCAAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCa                              >  5:27754/1‑121 (MQ=255)                                                                                                                                 cAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCga  <  2:98523/147‑1 (MQ=255)                                                                                                                                 cAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCga  <  4:177117/147‑1 (MQ=255)                                                                                                                                   |                                                                                                                                                   GCTGAAGCTGCCCTGTCCGCACTGGAAATGGTCAGCCTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCGA  >  NC_002947/604110‑604383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.