New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	604239 =	46 (0.830)	3 (0.060)	3/248	NT	6.3%	coding (71/501 nt)	nusB	transcription antitermination protein
	?	NC_002947	604287 =	45 (0.840)					coding (119/501 nt)	nusB	transcription antitermination protein

GTCAGCCTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCGAGATCCTGCATGGGGTCCCGGCAATCAAGGGCGAAATCGACAAAGC  >  NC_002947/604140‑604428                                                                                                                                                      |                                                                                                                                               gTCAGCCTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTAc                                                                                                                                               <  4:200198/149‑1 (MQ=255)  tCAGCCTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTAc                                                                                                                                               >  6:325987/1‑148 (MQ=255)    aGCCTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAg                                                                                                                                            <  5:312063/149‑1 (MQ=255)      gcggaaataggcaccgtcgacatcggtgaaatcgttatccacccggaattgcgcttcgatctcgttcagcgaatgctgggccatgtgccactggtAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTAcc                                                                                                                                              >  1:86184‑M1/96‑146 (MQ=255)      ccTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGTCGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑TGATGCCGTCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTg                                                                                                                                          <  2:303958/149‑1 (MQ=255)        tgctgGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTgg                                                                                                                                         >  1:143322/1‑148 (MQ=255)             gcgcAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGcaca                                                                                                                                     <  7:107891/147‑1 (MQ=255)             gcgcAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATg                                                                                                                                   >  6:63238/1‑149 (MQ=255)                             aGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGa                                                                                                                   <  7:65520/149‑1 (MQ=255)                                     gCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGCGGGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAAc                                                                                                                 >  1:69984/1‑144 (MQ=255)                                        acgaAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGaa                                                                                                        <  3:37233/149‑1 (MQ=255)                                          gaAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCAtt                                                                                                                         >  8:149493/1‑130 (MQ=255)                                          gaAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCAtt                                                                                                                         <  7:149493/130‑1 (MQ=255)                                          gaAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAgc                                                                                                      >  7:72183/1‑149 (MQ=255)                                                    gTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCgg                                                                                           <  7:130917/149‑1 (MQ=255)                                                     tttCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCggg                                                                                          >  2:37877/1‑149 (MQ=255)                                                            ccGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCGAAAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTAGCTGAACGAGAACCAAGCGCAATT‑CCGGGTGGAt                                                                                     >  1:98523/1‑148 (MQ=255)                                                            ccGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTgg                                                                                       >  1:154009/1‑145 (MQ=255)                                                            ccGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTgg                                                                                       <  2:154009/145‑1 (MQ=255)                                                            ccGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATaa                                                                                   >  6:221007/1‑149 (MQ=255)                                                            ccGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGCCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATa                                                                                    >  5:161438/1‑148 (MQ=255)                                                                gcgATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGAt                                                                               <  5:63238/149‑1 (MQ=255)                                                                      cAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCAcc                                                                         >  4:186294/1‑149 (MQ=255)                                                                        aaaCCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGa                                                                       <  2:69984/149‑1 (MQ=255)                                                                           ccTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCTCATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGt                                                                    >  3:177117/1‑149 (MQ=255)                                                                               c‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGAt                                                                      >  6:30997/1‑143 (MQ=255)                                                                               c‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGAt                                                                      <  5:30997/143‑1 (MQ=255)                                                                                  gATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATTCCCGGGTGGATAACGATTTCACCGATGTCGACg                                                               <  1:37877/149‑1 (MQ=255)                                                                                      ccGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGc                                                           <  6:216469/148‑1 (MQ=255)                                                                                       cGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCt                                                         <  5:221007/149‑1 (MQ=255)                                                                                           aaGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTAttt                                                     <  8:72183/149‑1 (MQ=255)                                                                                           aaGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTAttt                                                     <  1:68025/149‑1 (MQ=255)                                                                                              cccTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGaa                                                                                                                  >  6:176138/1‑86 (MQ=255)                                                                                              cccTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGaa                                                                                                                  <  5:176138/86‑1 (MQ=255)                                                                                                 tCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCa                                                                           <  6:27754/121‑1 (MQ=255)                                                                                                 tCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCAAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCa                                                                           >  5:27754/1‑121 (MQ=255)                                                                                                   ggtagagggcctgggtcgcgagcttgcgggcttcgcggcgcttggcgctctACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCcgc                                                 >  1:86184‑M2/52‑146 (MQ=255)                                                                                                   cAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCga                                               <  2:98523/147‑1 (MQ=255)                                                                                                   cAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCga                                               <  4:177117/147‑1 (MQ=255)                                                                                                       gagggcctgggtcgcgagcttgcgggcttcgcggcgcttggcgctctACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCGAGATcc                                          >  3:302732‑M2/48‑149 (MQ=255)                                                                                                       gagggcctgggtcgcgagcttgcgggcttcgcggcgcttggcgctctACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCGAGATc                                           <  2:86184‑M2/101‑1 (MQ=255)                                                                                                            cAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCGAGATCCTGCATg                                    >  7:17474/1‑149 (MQ=255)                                                                                                            cAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCGAGATCCTGCATg                                    >  4:225984/1‑149 (MQ=255)                                                                                                             aaGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCGAGATCCTGCATgg                                   <  3:186294/149‑1 (MQ=255)                                                                                                                 gccgcG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCGAGATCCTGCATg                                    >  5:213622/1‑144 (MQ=255)                                                                                                                 gccgcG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCGAGATCCTGCATg                                    <  6:213622/144‑1 (MQ=255)                                                                                                                  ccgcG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCcgc                                                 <  6:186229/130‑1 (MQ=255)                                                                                                                  ccgcG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCcgc                                                 >  5:186229/1‑130 (MQ=255)                                                                                                                              gCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCGAGATCCTGCATGGGGTCCCGGCAATCAAg                   >  7:37713/1‑149 (MQ=255)                                                                                                                                 aGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCGAGATCCTGCATGGGGTCCCGGCAATCAAGGGc                <  3:225984/149‑1 (MQ=255)                                                                                                                                  gCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCGAGATCCTGCATGGGGTCCCGGCAATCAAGGGc                >  6:60270/1‑148 (MQ=255)                                                                                                                                      gcgACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCGAGATCCTGCATGGGGTCCCGGCAATCAAGGGCGaaa            >  4:312842/1‑148 (MQ=255)                                                                                                                                               gCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCGAGATCCTGCATGGGGTCCCGGCAATCAAGGGCGAAATCGACAAAgc  >  5:156953/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                               GTCAGCCTGCTGGCGCAGTTGGAGGCCAAGTGATTAGCGACGAAAGCGATCGTTTCAACCCGCGCGATCCAAAACCTGC‑GGATGCCGGCAAGCCCTCCAAGAGCGCCAAGCGCCGCG‑AAGCCCGCAAGCTCGCGACCCAGGCCCTCTACCAGTGGCACATGGCCCAGCATTCGCTGAACGAGATCGAAGCGCAATT‑CCGGGTGGATAACGATTTCACCGATGTCGACGGTGCCTATTTCCGCGAGATCCTGCATGGGGTCCCGGCAATCAAGGGCGAAATCGACAAAGC  >  NC_002947/604140‑604428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.