New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 890884 =51 (0.920)4 (0.080) 4/242 NT 8.3% coding (48/711 nt) yiaD OmpA/MotB domain‑containing protein
?NC_002947 890927 = 40 (0.760)coding (91/711 nt) yiaD OmpA/MotB domain‑containing protein

GGAATTTTTCGTTGCCGATGCGTTCCAAGGCTGGCATAGAACCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCC  >  NC_002947/890741‑891032
                                                                                                                                               |                                                                                                                                                    
cctgcagcggcagcacccactgctgcggcacagatcagggcccccttgccacggttgttgtggtcgatggcggcaccctcgatggcaccggccagcgcgcccaaaccgccgtacttggcagtcttgctcatccctgtggagccCTgcgc                                                                                                                                                 >  6:320045‑M1/144‑149 (MQ=255)
           ttGCCGATGCGTTCCAAGGCTGGCATAGAACCCCTTTGGATCTGCCTCATTTATGAATTTCAGTAGGAGCTTCTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAAcc                                                                                                                                      <  8:88365/149‑1 (MQ=255)
             gCCGATGCGTTCCAAGGCTGGCATAGAACCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCt                                                                                                                                    >  1:83192/1‑149 (MQ=255)
               cGATGCGTTCCAAGGCTGGCATAGAACCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTa                                                                                                                                  >  7:207891/1‑149 (MQ=255)
               cGATGCGTTCCAAGGCTGGCATAGAACCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTa                                                                                                                                  >  6:292746/1‑149 (MQ=255)
               cGATGCGTTCCAAGGCTGGCATAGAACCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTa                                                                                                                                  <  3:278611/149‑1 (MQ=255)
                         cAAGGCTGGCATAGAACCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAg                                                                                                                        >  8:120558/1‑149 (MQ=255)
                          aaGGCTGGCATAGAACCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAgg                                                                                                                       <  4:129041/149‑1 (MQ=255)
                           aGGCTGGCATAGAACCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAggg                                                                                                                      <  2:83192/149‑1 (MQ=255)
                            ggCTGGCATAGAACCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGt                                                                                                                     <  2:212751/149‑1 (MQ=255)
                              ccgatcagggcccccttgccacggttgttgtggtcgatggcggcacccgcgatggcaccggccagcgcgcccaaaccgccgtacttggcagtcttgctcatccctgtggagccCTGCGCCGGCCAGAACCCTTACGACAACCAGGGt                                                                                                                     <  8:305047‑M1/34‑1 (MQ=255)
                                gatcagggcccccttgccacggttgttgtggtcgatggcggcacccgcgatggcaccggccagcgcgcccaaaccgccgtacttggcagtcttgctcatccctgtggagccCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAgg                                                                                                                 <  1:29806‑M1/38‑1 (MQ=255)
                                  cATAGAACCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGgcg                                                                                                               >  3:277362/1‑149 (MQ=255)
                                      ggcccccttgccacggttgttgtggtcgatggcggcacccgcgatggcaccggccagcgcgcccaaaccgccgtacttggcagtcttgctcatccctgtggagccCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAgg                                                                                                           >  2:29806‑M1/106‑149 (MQ=255)
                                       aaacccTTGCGATCTGCCGCATTTATGAATTTCAGTATGAGCTTGTCAATGTTCACAATGCGTCTTAAGATTATAGTCGAAACCCCAGCTGCACTCATAAAAGCCTGCGACGTCCAGAACCCTTACGACAACCAGGGTCAGgcgcgtg                                                                                                           >  8:336736/4‑145 (MQ=255)
                                        cccccttgccacggttgttgtggtcgatggcggcacccgcgatggcaccggccagcgcgcccaaaccgccgtacttggcagtcttgctcatccctgtggagccCTGCGCCGGCCAGAACCCTTACGACAACCAGCGTCAGGCGCAGGGc                                                                                                         >  7:305047‑M1/104‑149 (MQ=255)
                                        aCCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTAACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATCACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAggg                                                                                                          >  1:88233/1‑148 (MQ=255)
                                          cccTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTc                                                                                                       <  4:277362/149‑1 (MQ=255)
                                           ccTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTc                                                                                                       >  4:38881/1‑148 (MQ=255)
                                            cTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCca                                                                                                     >  5:83482/1‑149 (MQ=255)
                                               gggATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCcaca                                                                                                   <  7:120558/148‑1 (MQ=255)
                                                ggATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAgg                                                                                                 <  8:207891/149‑1 (MQ=255)
                                                 gATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAggg                                                                                                <  3:38881/149‑1 (MQ=255)
                                                 gATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAgg                                                                                                 >  5:190172/1‑148 (MQ=255)
                                                    cTGCCGCATTTATGAATTTCAGTTGGAGCTTGTCCATGTTCAGCATGCGTCGTCTGATTATCGTCGCATCCGCCGCTGCACTGATGACCGGGTGCGCCGGCCAGAACCCTTAGGAGAACCAGGGTGAGGCGCAGGGCTCCACAGGGAt                                                                                              <  2:88233/148‑1 (MQ=255)
                                                      gCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAg                                                                                           >  7:339533/1‑149 (MQ=255)
                                                       ccGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGc                                                                                          <  5:292746/149‑1 (MQ=255)
                                                           aTTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCa                                                                                                             <  5:193194/126‑1 (MQ=255)
                                                           aTTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCa                                                                                                             >  6:193194/1‑126 (MQ=255)
                                                               aTGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACg                                                                                                                                >  6:234072/1‑103 (MQ=255)
                                                               aTGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACg                                                                                                                                <  5:234072/103‑1 (MQ=255)
                                                                tGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGAGCGGCTGCGCCg                                                                                                                                               <  2:303299/87‑1 (MQ=255)
                                                                tGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGAGCGGCTGCGCCg                                                                                                                                               >  1:303299/1‑87 (MQ=255)
                                                                  aaTTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCaa                                                                               <  2:24531/149‑1 (MQ=255)
                                                                    tttCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGt                                                                             <  6:83482/149‑1 (MQ=255)
                                                                               gCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTg                                                                  >  5:67050/1‑149 (MQ=255)
                                                                               gCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTg                                                                  >  3:64169/1‑149 (MQ=255)
                                                                                 ttGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTggg                                                                >  5:293082/1‑149 (MQ=255)
                                                                                   gTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGgcg                                                              >  7:251182/1‑149 (MQ=255)
                                                                                       aTGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGAt                                                                                              <  3:55247/113‑1 (MQ=255)
                                                                                       aTGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGAt                                                                                              >  4:55247/1‑113 (MQ=255)
                                                                                       aTGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCt                                                          >  4:223768/1‑149 (MQ=255)
                                                                                                   cgtcgtCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCAt                                              <  6:67050/149‑1 (MQ=255)
                                                                                                    gtcgtcTTATTATCGTCGCAACCGCAGCTGCACTGATGACCGGCTGCTCCGGCCATAACCCTTACGACAACCAGGGTCAGGCGCTGGGCTCCACATGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATc                                             <  7:336736/149‑1 (MQ=255)
                                                                                                        tcTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCgg                                         <  3:223768/149‑1 (MQ=255)
                                                                                                           gATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTg                                      >  8:137780/1‑149 (MQ=255)
                                                                                                           gATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTg                                      >  8:142455/1‑149 (MQ=255)
                                                                                                            aTTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGt                                       <  8:339533/147‑1 (MQ=255)
                                                                                                                  gtcgCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGTGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCAt                               <  8:251182/149‑1 (MQ=255)
                                                                                                                   tcgCAACCGCCGCTGCACTGATGACCTGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGTGCGCGCTGGCCGGTGCCATCGCGGGTGACGACATc                              >  8:331155/1‑149 (MQ=255)
                                                                                                                   tcgCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATc                              >  6:268940/1‑149 (MQ=255)
                                                                                                                     gCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGa                            <  6:293082/149‑1 (MQ=255)
                                                                                                                     gCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGa                            >  3:214438/1‑149 (MQ=255)
                                                                                                                                tGCACTGATGACCGGCTGCGCCGGCAAGCACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCAACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACGAcc                 >  1:126251/1‑149 (MQ=255)
                                                                                                                                  cACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAAcc                 <  4:64169/147‑1 (MQ=255)
                                                                                                                                    cTGATGACCGGCTGCGCAGTCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTgg             <  7:331155/149‑1 (MQ=255)
                                                                                                                                           ccGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAgggg      <  5:268940/149‑1 (MQ=255)
                                                                                                                                             ggCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCg                             <  6:5539/124‑1 (MQ=255)
                                                                                                                                             ggCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCg                             >  5:5539/1‑124 (MQ=255)
                                                                                                                                             ggCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGc    <  6:190172/149‑1 (MQ=255)
                                                                                                                                               CTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGccc  >  4:214438‑M1/1‑149 (MQ=255)
                                                                                                                                               |                                                                                                                                                    
GGAATTTTTCGTTGCCGATGCGTTCCAAGGCTGGCATAGAACCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCC  >  NC_002947/890741‑891032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.