New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	890884 =	51 (0.920)	4 (0.080)	4/242	NT	8.3%	coding (48/711 nt)	yiaD	OmpA/MotB domain‑containing protein
	?	NC_002947	890927 =	40 (0.760)					coding (91/711 nt)	yiaD	OmpA/MotB domain‑containing protein

GAACCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCGGTGCCGCAGCAGTGGGTGCTGCCGCTGCAGG  >  NC_002947/890779‑891069                                                                                                                                                     |                                                                                                                                               ggcccccttgccacggttgttgtggtcgatggcggcacccgcgatggcaccggccagcgcgcccaaaccgccgtacttggcagtcttgctcatccctgtggagccCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAgg                                                                                                                                                >  2:29806‑M1/106‑149 (MQ=255)   cccccttgccacggttgttgtggtcgatggcggcacccgcgatggcaccggccagcgcgcccaaaccgccgtacttggcagtcttgctcatccctgtggagccCTGCGCCGGCCAGAACCCTTACGACAACCAGCGTCAGGCGCAGGGc                                                                                                                                              >  7:305047‑M1/104‑149 (MQ=255)   aCCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTAACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATCACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAggg                                                                                                                                               >  1:88233/1‑148 (MQ=255)     cccTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTc                                                                                                                                            <  4:277362/149‑1 (MQ=255)      ccTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTc                                                                                                                                            >  4:38881/1‑148 (MQ=255)       cTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCca                                                                                                                                          >  5:83482/1‑149 (MQ=255)          gggATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCcaca                                                                                                                                        <  7:120558/148‑1 (MQ=255)           ggATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAgg                                                                                                                                      <  8:207891/149‑1 (MQ=255)            gATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAggg                                                                                                                                     <  3:38881/149‑1 (MQ=255)            gATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAgg                                                                                                                                      >  5:190172/1‑148 (MQ=255)               cTGCCGCATTTATGAATTTCAGTTGGAGCTTGTCCATGTTCAGCATGCGTCGTCTGATTATCGTCGCATCCGCCGCTGCACTGATGACCGGGTGCGCCGGCCAGAACCCTTAGGAGAACCAGGGTGAGGCGCAGGGCTCCACAGGGAt                                                                                                                                   <  2:88233/148‑1 (MQ=255)                 gCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAg                                                                                                                                >  7:339533/1‑149 (MQ=255)                  ccGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGc                                                                                                                               <  5:292746/149‑1 (MQ=255)                             aaTTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCaa                                                                                                                    <  2:24531/149‑1 (MQ=255)                               tttCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGt                                                                                                                  <  6:83482/149‑1 (MQ=255)                                          gCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTg                                                                                                       >  5:67050/1‑149 (MQ=255)                                          gCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTg                                                                                                       >  3:64169/1‑149 (MQ=255)                                            ttGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTggg                                                                                                     >  5:293082/1‑149 (MQ=255)                                              gTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGgcg                                                                                                   >  7:251182/1‑149 (MQ=255)                                                  aTGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGAt                                                                                                                                   >  4:55247/1‑113 (MQ=255)                                                  aTGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGAt                                                                                                                                   <  3:55247/113‑1 (MQ=255)                                                  aTGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCt                                                                                               >  4:223768/1‑149 (MQ=255)                                                              cgtcgtCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCAt                                                                                   <  6:67050/149‑1 (MQ=255)                                                               gtcgtcTTATTATCGTCGCAACCGCAGCTGCACTGATGACCGGCTGCTCCGGCCATAACCCTTACGACAACCAGGGTCAGGCGCTGGGCTCCACATGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATc                                                                                  <  7:336736/149‑1 (MQ=255)                                                                   tcTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCgg                                                                              <  3:223768/149‑1 (MQ=255)                                                                      gATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTg                                                                           >  8:137780/1‑149 (MQ=255)                                                                      gATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTg                                                                           >  8:142455/1‑149 (MQ=255)                                                                       aTTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGt                                                                            <  8:339533/147‑1 (MQ=255)                                                                             gtcgCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGTGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCAt                                                                    <  8:251182/149‑1 (MQ=255)                                                                              tcgCAACCGCCGCTGCACTGATGACCTGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGTGCGCGCTGGCCGGTGCCATCGCGGGTGACGACATc                                                                   >  8:331155/1‑149 (MQ=255)                                                                              tcgCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATc                                                                   >  6:268940/1‑149 (MQ=255)                                                                                gCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGa                                                                 <  6:293082/149‑1 (MQ=255)                                                                                gCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGa                                                                 >  3:214438/1‑149 (MQ=255)                                                                                           tGCACTGATGACCGGCTGCGCCGGCAAGCACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCAACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACGAcc                                                      >  1:126251/1‑149 (MQ=255)                                                                                             cACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAAcc                                                      <  4:64169/147‑1 (MQ=255)                                                                                               cTGATGACCGGCTGCGCAGTCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTgg                                                  <  7:331155/149‑1 (MQ=255)                                                                                                      ccGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAgggg                                           <  5:268940/149‑1 (MQ=255)                                                                                                       gccctgcgcctgacgctggttgtcgtaagggttctggccggcgcagGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAggggg                                          >  7:305047‑M2/47‑149 (MQ=255)                                                                                                        ggCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCg                                                                  <  6:5539/124‑1 (MQ=255)                                                                                                        ggCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCg                                                                  >  5:5539/1‑124 (MQ=255)                                                                                                        ggCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGc                                         <  6:190172/149‑1 (MQ=255)                                                                                                         cctgcgcctgaccctggttgtcgtaagggttctggccggcgcagGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGcc                                        >  2:29806‑M2/45‑149 (MQ=255)                                                                                                          CTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGccc                                       >  4:214438‑M1/1‑149 (MQ=255)                                                                                                              GCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCTAGGGGGCCCTGAt                                   >  7:137780‑M1/1‑149 (MQ=255)                                                                                                              GCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCTAGGGGGCCCTGAt                                   >  7:142455‑M1/1‑149 (MQ=255)                                                                                                               cctgaccctggttgtcgtaagggttctggccggcgcagGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATc                                  <  1:29806‑M2/111‑1 (MQ=255)                                                                                                               CCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGt                                                    <  2:8479‑M1/131‑1 (MQ=255)                                                                                                               CCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGt                                                    >  1:8479‑M1/1‑131 (MQ=255)                                                                                                                   accctggttgtcgtaagggttctggccggcgcagGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCgg                                <  8:305047‑M2/113‑1 (MQ=255)                                                                                                                            ttACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCGGTGCCGcagcag                     >  3:43845/1‑149 (MQ=255)                                                                                                                            ttACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCGGTGCCGcagcag                     >  1:204655/1‑149 (MQ=255)                                                                                                                                 acaacaAGGGTCAGGCGCAGGGCTCCAAATGGATTAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCAATCGACCACAACAAGCGTGGCAAGGTTGCCCTTATCGGTGCCTCAGCAGTGGGt                <  2:126251/149‑1 (MQ=255)                                                                                                                                 aCAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCGGTGCCGCAGCAGTGGGt                >  6:143163/1‑149 (MQ=255)                                                                                                                                   aaCCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCGGTGCCGCAGCAGTGGGtgc              >  2:264091/1‑149 (MQ=255)                                                                                                                                               gcgcagGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGAGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCTGTGCCGCAGCAGTGGGTGCTGCCGCTGCAgg  >  6:320045‑M2/7‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                               GAACCCCTTGGGATCTGCCGCATTTATGAATTTCAGTAGGAGCTTGTCCATGTTCACCATGCGTCGTCTGATTATCGTCGCAACCGCCGCTGCACTGATGACCGGCTGCGCCGGCCAGAACCCTTACGACAACCAGGGTCAGGCGCAGGGCTCCACAGGGATGAGCAAGACTGCCAAGTACGGCGGTTTGGGCGCGCTGGCCGGTGCCATCGCGGGTGCCGCCATCGACCACAACAACCGTGGCAAGGGGGCCCTGATCGGTGCCGCAGCAGTGGGTGCTGCCGCTGCAGG  >  NC_002947/890779‑891069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.