New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1260815	31 (0.560)	3 (0.060)	3/240	NT	8.8%	coding (636/2451 nt)	PP_1103	DEAD box family ATP‑dependent helicase
	?	NC_002947	= 1260846	33 (0.640)					coding (605/2451 nt)	PP_1103	DEAD box family ATP‑dependent helicase

GGGTGTTGGTGAACACCAGGCTACTGGCACTGGCATCGATCTCGTGACAGACCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGCCGAGGGTTGCCGACAAGCCCCAGGTCGGTAGGCCCGGGTGCCAATGCCGCAGGCGCGCCAAGGCCAGCTGCAGTTGTACCCCGCGC  >  NC_002947/1260670‑1260962                                                                                                                                                  |                                                                                                                                                    gggTGTTGGTGAACACCAGGCTACTGGCACTGGCATCGATCTCGTGACAGACCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCgg                                                                                                                                                  <  4:279599/149‑1 (MQ=255) gggTGTTGGTGAACACCAGGCTACTGGCACTGGCATCGATCTCGTGACAGACCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCAAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCgg                                                                                                                                                  <  6:258781/149‑1 (MQ=255)                         tggcactggcaTCGATCTCGTGACAGACCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTgg                                                                                                                          >  8:8040/1‑149 (MQ=255)                           gcactggcaTCGATCTCGTGACAGACCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTgggg                                                                                                                        >  7:60816/1‑149 (MQ=255)                                 gCATCGATCTCGTGACAGACCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAgc                                                                                                                    <  6:103923‑M2/147‑3 (MQ=255)                                   aTCGATCTCGTGACAGACCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGc                                                                                                                                            >  6:160189/1‑121 (MQ=255)                                   aTCGATCTCGTGACAGACCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGc                                                                                                                                            <  5:160189/121‑1 (MQ=255)                                   aTCGATCTCGTGACAGACCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAgcaaga                                                                                                                <  8:7669‑M2/149‑7 (MQ=255)                                   aTCGATCTCGTGACAGACCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAgcaaga                                                                                                                <  3:329338‑M2/149‑7 (MQ=255)                                     cGATCTCGTGACAGACCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAgcaagac                                                                                                               <  1:342701‑M2/148‑8 (MQ=255)                                          tcGTGACAGACCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCcg                                                                                                         >  8:143916/1‑149 (MQ=255)                                           cGTGACAGACCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCtgccccagggcggcctgctggtgcaaggccggcaagacaagg                                                                                                           >  4:127095‑M1/1‑104 (MQ=255)                                           cGTGACAGACCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCtgccccagggcggcctgctggtgcaaggccggcaagacaagg                                                                                                           <  3:127095‑M1/146‑43 (MQ=255)                                            gTGACAGACCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCtgccccagggcggcctgctggtgcaaggccggcaagacaa                                                                                                             <  6:172047‑M1/143‑41 (MQ=255)                                            gTGACAGACCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCcgtg                                                                                                       >  1:137301/1‑149 (MQ=255)                                             tGACAGACCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCcgtgc                                                                                                      <  4:329338/149‑1 (MQ=255)                                                   aCCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACAt                                                                                                             <  6:183682/136‑1 (MQ=255)                                                   aCCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACAt                                                                                                             >  5:183682/1‑136 (MQ=255)                                                        gTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAgg                                                                                            <  7:7669/148‑1 (MQ=255)                                                        gTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAg                                                                                             <  2:137301/147‑1 (MQ=255)                                                        gTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGt                                                                                           >  7:29813/1‑149 (MQ=255)                                                          cGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGc                                                                                               <  4:27236/143‑1 (MQ=255)                                                          cGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGc                                                                                               >  3:27236/1‑143 (MQ=255)                                                           gAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGc                                                                                        >  4:254979/1‑149 (MQ=255)                                                                    cAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGCCGAgg                                                                                   <  7:8040/145‑1 (MQ=255)                                                                    cAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGCCGAgg                                                                                   <  7:312593/145‑1 (MQ=255)                                                                       gCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGCCGAGGGTTGcc                                                                             >  3:245071/1‑148 (MQ=255)                                                                           aTGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGCCGAGGGTTGCCGACaa                                                                        <  2:342701/149‑1 (MQ=255)                                                                                tCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGCCGAGGGTTGCCGACAAGccc                                                                    <  4:245071/148‑1 (MQ=255)                                                                                  cAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGCCGAGGGTTGCCGACAAGCCCCa                                                                  <  8:60816/148‑1 (MQ=255)                                                                                    gCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGCCGAGGGTTGCCGACAAGCCCCAGGt                                                               <  7:143916/149‑1 (MQ=255)                                                                                          gggAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGCCGAGGGTTGCCGACAAGCCCCAGGTCGGTAg                                                         >  7:307312/1‑149 (MQ=255)                                                                                          gggAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGCCGAGGGTTGCCGACAAGCCCCAGGTCGGTAg                                                         <  5:103923/149‑1 (MQ=255)                                                                                                  cTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGCCGAGGGTTGCCGACAAGCCCCAGGTCGGTAGGCCCGGGt                                                 >  2:165952/1‑149 (MQ=255)                                                                                                          cTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGCCGAGGGTTGCCGACAAGCCCCAGGTc                                                              <  2:287184/128‑1 (MQ=255)                                                                                                          cTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGCCGAGGGTTGCCGACAAGCCCCAGGTc                                                              >  1:287184/1‑128 (MQ=255)                                                                                                          cTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGCCGAGGGTTGCCGACAAGCCCCAGGGCGGTAGGCCCGGGTGCCAATGc                                         >  6:232427/1‑149 (MQ=255)                                                                                                                gcagcaGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGCCGAGGGTTGCCGACAAGCCCCAGGTCGGTAGGCCCGGGTGCCAATGCCGCAgg                                   <  8:29813/149‑1 (MQ=255)                                                                                                                                  gCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGCCGAGGGTTGCCGACAAGCCCCAGGTCGGTAGGCCCGGGTGCCAATGCCGCAGGCGCGCCAAGGCCAGCTg                  >  3:292725/1‑148 (MQ=255)                                                                                                                                    aGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGCCGAGGGTTGCCGACAAGCCCCAGGTCGGTAGGCCCGGGTGCCAATGCCGCAGGCGCGCCAAGGCCAGCTGCAg               <  4:292725/149‑1 (MQ=255)                                                                                                                                        ccTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAgcaagacaaggcactgcaagtcgacaccctgctgccaaaagcgatcgagcgcttcccttgggctggacacatgggcctgaagatgctcgaccaggtctgtcacg              >  4:127095‑M2/1‑42 (MQ=255)                                                                                                                                        ccTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAgcaagacaaggcactgcaagtcgacaccctgctgccaaaagcgatcgagcgcttcccttgggctggacacatgggcctgaagatgctcgaccaggtctgtcacg              <  3:127095‑M2/146‑105 (MQ=255)                                                                                                                                          ttGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAgcaagacaaggcactgcaagtcgacaccctgctgccaaaagcgatcgagcgcttcccttgggctggacacatgggcctgaagatgctcgaccaggtctgtcac               <  6:172047‑M2/143‑104 (MQ=255)                                                                                                                                            gTCTTGCtgccccagggcggcctgctggtgcaaggccggcaagacaaggcactgcaagtcgacaccctgctgccaaaagcgatcgagcgcttcccttgggctggacacatgggcctgaagatgctcgaccaggtctgtcacgagatcg        <  1:342701‑M1/148‑142 (MQ=255)                                                                                                                                             tCTTGCtgccccagggcggcctgctggtgcaaggccggcaagacaaggcactgcaagtcgacaccctgctgccaaaagcgatcgagcgcttcccttgggctggacacatgggcctgaagatgctcgaccaggtctgtcacgagatcgat      <  3:329338‑M1/149‑144 (MQ=255)                                                                                                                                             tCTTGCtgccccagggcggcctgctggtgcaaggccggcaagacaaggcactgcaagtcgacaccctgctgccaaaagcgatcgagcgcttcccttgggctggacacatgggcctgaagatgctcgaccaggtctgtcacgagatcgat      <  8:7669‑M1/149‑144 (MQ=255)                                                                                                                                                 gctgccccagggcggcctgctggtgcaaggccggcaagacaaggcactgcaagtcgacaccctgctgccaaaagcgatcgagcgcttcccttgggctggacacatgggcctgaagatgctcgaccaggtctgtcacgagatcgatgc    <  6:103923‑M1/147‑146 (MQ=255)                                                                                                                                                 gCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGCCGAGGGTTGCCGACAAGCCCCAGGTCGGTAGGCCCGGGTGCCAATGCCGCAGGCGCGCCAAGGCCAGCTGCAGTTGTACCCCgcgc  >  2:237316/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GGGTGTTGGTGAACACCAGGCTACTGGCACTGGCATCGATCTCGTGACAGACCTGGTCGAGCATCTTCAGGCCCATGTGTCCAGCCCAAGGGAAGCGCTCGATCGCTTTTGGCAGCAGGGTGTCGACTTGCAGTGCCTTGTCTTGCCGGCCTTGCACCAGCAGGCCGCCCTGGGGCAGCAAGACATCCCGTGCGTGTTGCAGGTTGCCGAGGGTTGCCGACAAGCCCCAGGTCGGTAGGCCCGGGTGCCAATGCCGCAGGCGCGCCAAGGCCAGCTGCAGTTGTACCCCGCGC  >  NC_002947/1260670‑1260962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.