New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1416566	44 (0.790)	3 (0.060)	3/240	NT	6.2%	coding (936/1122 nt)	PP_1238	lipoprotein
	?	NC_002947	= 1416608	50 (0.960)					coding (978/1122 nt)	PP_1238	lipoprotein

CGACCTGGACCGCGCCTGGTCTGGCGTGGGCCGTGCCCTGGAGCAGGGTGGCGAATGGCGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTCGCCC  >  NC_002947/1416422‑1416714                                                                                                                                                 |                                                                                                                                                     cGACCTGGACCGCGCCTGGTCTGGCGTGGGCCGTGCCCTGGAGCAGGGTGGCGAATGGCGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCacgc                                                                                                                                                  >  7:1943‑M1/1‑145 (MQ=255)   aCCTGGACCGCGCCTGGTCTGGCGTGGGCCGTGCCCTGGAGCAGGGTGGCGAATGGCGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAgc                                                                                                                                                <  7:235981/149‑1 (MQ=255)     cTGGACCGCGCCTGGTCTGGCGTGGGCCGTGCCCTGGAGCAGGGTGGCGAATGGCGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAgccg                                                                                                                                              >  2:83872/1‑149 (MQ=255)        gACCGCGCCTGGTCTGGCGTGGGCCGTGCCCTGGAGCAGGGTGGCGAATGGCGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAgccgc                                                                                                                                             <  8:177215/147‑1 (MQ=255)                       ggCGTGGGCCGTGCCCTGGAGCAGGGTGGCGAATGGCGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGcc                                                                                                                            >  8:32539/1‑149 (MQ=255)                        gCGTGGGCCGTGCCCTGGAGCAGGGTGGCGAATGGCGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGcc                                                                                                                            >  5:163366/1‑148 (MQ=255)                              gCCGTGCCCTGGAGCAGGGTGGCGAATGGCGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAg                                                                                                                     <  2:20687/149‑1 (MQ=255)                                  tGCCCTGGAGCAGGGTGGCGAATGGCGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCgg                                                                                                                                     >  8:258837/1‑129 (MQ=255)                                  tGCCCTGGAGCAGGGTGGCGAATGGCGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCgg                                                                                                                                     <  7:258837/129‑1 (MQ=255)                                    cccTGGAGCAGGGTGGCGAATGGCGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAaga                                                                                                                <  7:57590/148‑1 (MQ=255)                                      cTGGAGCAGGGTGGCGAATGGCGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCg                                                                                                             >  4:296533/1‑149 (MQ=255)                                         gAGCAGGGTGGCGAATGGCGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGt                                                                                                            <  5:280213/147‑1 (MQ=255)                                                          gCGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAgccgc                                                                                                                                             <  6:103043/97‑1 (MQ=255)                                                          gCGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAgccgc                                                                                                                                             >  5:103043/1‑97 (MQ=255)                                                           cGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTa                                                                                        >  8:148636/1‑149 (MQ=255)                                                            gggTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTAc                                                                                       <  7:213472/149‑1 (MQ=255)                                                               ttGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAg                                                                                    <  5:345686/149‑1 (MQ=255)                                                                 gAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGt                                                                                  >  5:127905/1‑149 (MQ=255)                                                                  aGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCacgctcttccttggtcggctcgctgccgaaccggcggctgaagaagcccggctggttctgcttgtcgt                                                                                  <  8:1943‑M1/148‑69 (MQ=255)                                                                  aGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCAGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGtt                                                                                 >  5:255432/1‑149 (MQ=255)                                                                    gACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCg                                                                               >  1:297760/1‑149 (MQ=255)                                                                          aaCCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGa                                                                          <  3:296533/148‑1 (MQ=255)                                                                          aaCCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAg                                                                         >  3:183201/1‑149 (MQ=255)                                                                             cGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCacgctcttccttggtcggctcgctgccgaacaggcggctgaaga                                                                                                          >  4:261705‑M1/1‑69 (MQ=255)                                                                             cGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCacgctcttccttggtcggctcgctgccgaacaggcggctgaaga                                                                                                          <  3:261705‑M1/113‑45 (MQ=255)                                                                               cAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGc                                                                              <  7:161143/139‑1 (MQ=255)                                                                               cAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGc                                                                              >  8:161143/1‑139 (MQ=255)                                                                                              ctacATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTg                                                      <  4:183201/148‑1 (MQ=255)                                                                                                acATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCt                                                                            >  6:320421/1‑124 (MQ=255)                                                                                                acATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCt                                                                            <  5:320421/124‑1 (MQ=255)                                                                                                     aaCCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCa                                               <  7:148636/148‑1 (MQ=255)                                                                                                     aaCCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCAc                                              >  4:105217/1‑149 (MQ=255)                                                                                                      aCCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACg                                             <  7:32539/149‑1 (MQ=255)                                                                                                       ccTGTCCGAAAAGCCTGACGACTAACAGAACCAGCCGGGATTATTCAGCCGCCTGTTCGGCAGCGAGCCGACAAAGAAAAAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTACGCCTGAGCAATGTGGGTGAGAGCGTGCAGGTCACgg                                            >  7:224884/1‑149 (MQ=255)                                                                                                           tCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCga                                        <  1:83872/149‑1 (MQ=255)                                                                                                            ccGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTc                                          >  2:45024/1‑146 (MQ=255)                                                                                                              gAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGaa                                     <  6:163366/149‑1 (MQ=255)                                                                                                                     cTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACAt                               >  3:208608/1‑148 (MQ=255)                                                                                                                     cTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATc                              <  8:224884/149‑1 (MQ=255)                                                                                                                      tGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATc                              >  3:240917/1‑148 (MQ=255)                                                                                                                       gacgacAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGaaaa                                   >  6:178436/1‑142 (MQ=255)                                                                                                                       gacgacAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGaaaa                                   <  5:178436/142‑1 (MQ=255)                                                                                                                        acgacAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCGGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTgaagcccggctggttctgcttgtcgtcaggcttttcggacaggttgatgtagtacaggcccaggctgcggttgatgtcct                            <  8:1943‑M2/148‑81 (MQ=255)                                                                                                                          gacAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAacac                         >  7:200209/1‑149 (MQ=255)                                                                                                                                   aaCCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAg                                                   <  7:312446/114‑1 (MQ=255)                                                                                                                                   aaCCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAg                                                   >  8:312446/1‑114 (MQ=255)                                                                                                                                   aaCCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTcc                >  2:160033/1‑149 (MQ=255)                                                                                                                                         ccGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGa          <  4:240917/149‑1 (MQ=255)                                                                                                                                          cGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGAt         <  2:297760/149‑1 (MQ=255)                                                                                                                                             gCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTc      >  4:341758/1‑149 (MQ=255)                                                                                                                                                tcttcAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTgaagcccggctggttctgcttgtcgtcaggcttttcggacaggttgatgtagtacaggcccaggctgcg                                       <  3:261705‑M2/113‑70 (MQ=255)                                                                                                                                                tcttcAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTgaagcccggctggttctgcttgtcgtcaggcttttcggacaggttgatgtagtacaggcccaggctgcg                                       >  4:261705‑M2/1‑44 (MQ=255)                                                                                                                                                 cttcAGCCGCCTGTTCTGCAGCGTTCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTcgcc   <  6:255432/148‑1 (MQ=255)                                                                                                                                                 cttcAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTcgccc  >  2:286542/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     CGACCTGGACCGCGCCTGGTCTGGCGTGGGCCGTGCCCTGGAGCAGGGTGGCGAATGGCGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTCGCCC  >  NC_002947/1416422‑1416714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.