New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1416566 | 44 (0.790) | 3 (0.060) | 3/240 | NT | 6.2% | coding (936/1122 nt) | PP_1238 | lipoprotein |
? | NC_002947 | = 1416608 | 50 (0.960) | coding (978/1122 nt) | PP_1238 | lipoprotein |
GAGCAGGGTGGCGAATGGCGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTCGCCCGCCGCGTGCTGAGCGCTATTCAGGACCACCTGGGCTAAGTG > NC_002947/1416462‑1416755 | gAGCAGGGTGGCGAATGGCGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑Gt < 5:280213/147‑1 (MQ=255) cGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTa > 8:148636/1‑149 (MQ=255) gggTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTAc < 7:213472/149‑1 (MQ=255) ttGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAg < 5:345686/149‑1 (MQ=255) gAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGt > 5:127905/1‑149 (MQ=255) aGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCAGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGtt > 5:255432/1‑149 (MQ=255) gACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCg > 1:297760/1‑149 (MQ=255) aaCCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGa < 3:296533/148‑1 (MQ=255) aaCCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAg > 3:183201/1‑149 (MQ=255) cAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGc > 8:161143/1‑139 (MQ=255) cAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGc < 7:161143/139‑1 (MQ=255) ctacATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTg < 4:183201/148‑1 (MQ=255) acATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCt < 5:320421/124‑1 (MQ=255) acATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCt > 6:320421/1‑124 (MQ=255) aaCCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCa < 7:148636/148‑1 (MQ=255) aaCCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCAc > 4:105217/1‑149 (MQ=255) aCCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACg < 7:32539/149‑1 (MQ=255) ccTGTCCGAAAAGCCTGACGACTAACAGAACCAGCCGGGATTATTCAGCCGCCTGTTCGGCAGCGAGCCGACAAAGAAAAAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTACGCCTGAGCAATGTGGGTGAGAGCGTGCAGGTCACgg > 7:224884/1‑149 (MQ=255) tCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCga < 1:83872/149‑1 (MQ=255) ccGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTc > 2:45024/1‑146 (MQ=255) gAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGaa < 6:163366/149‑1 (MQ=255) cTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACAt > 3:208608/1‑148 (MQ=255) cTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATc < 8:224884/149‑1 (MQ=255) tGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATc > 3:240917/1‑148 (MQ=255) gacgacAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGaaaa > 6:178436/1‑142 (MQ=255) gacgacAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGaaaa < 5:178436/142‑1 (MQ=255) acgacAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCGGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTgaagcccggctggttctgcttgtcgtcaggcttttcggacaggttgatgtagtacaggcccaggctgcggttgatgtcct < 8:1943‑M2/148‑81 (MQ=255) gacAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAacac > 7:200209/1‑149 (MQ=255) aaCCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAg > 8:312446/1‑114 (MQ=255) aaCCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAg < 7:312446/114‑1 (MQ=255) aaCCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTcc > 2:160033/1‑149 (MQ=255) ccGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGa < 4:240917/149‑1 (MQ=255) cGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGAt < 2:297760/149‑1 (MQ=255) gCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTc > 4:341758/1‑149 (MQ=255) tcttcAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTgaagcccggctggttctgcttgtcgtcaggcttttcggacaggttgatgtagtacaggcccaggctgcg > 4:261705‑M2/1‑44 (MQ=255) tcttcAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTgaagcccggctggttctgcttgtcgtcaggcttttcggacaggttgatgtagtacaggcccaggctgcg < 3:261705‑M2/113‑70 (MQ=255) cttcAGCCGCCTGTTCTGCAGCGTTCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTcgcc < 6:255432/148‑1 (MQ=255) cttcAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTcgccc > 2:286542/1‑149 (MQ=255) cAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGTCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACAt > 1:89464/1‑117 (MQ=255) cAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACAt < 2:89464/117‑1 (MQ=255) gccgccTGTTCGGCAGCGAGCCGACCAAGGAAGAGCGGTGAAGCCCGTGCCGAGCGTTACCAg > 1:239891/1‑63 (MQ=255) gccgccTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAg < 2:239891/62‑1 (MQ=255) ggCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTCGCCCGCCGCGTGCTGAgcgc > 6:130914/1‑149 (MQ=255) ggCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTCGCCCGCCGCGTGCTGAgcgc > 6:35714/1‑149 (MQ=255) ggCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTCGCCCGCCGCGTGCTGAgcg < 8:200209/148‑1 (MQ=255) gCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTCGCCCGCCGCGTGCTGAGCGCt < 4:208608/149‑1 (MQ=255) aGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTCGCCCGCCGCGTGCTGAGCGCTAt > 7:156738/1‑149 (MQ=255) aGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTCGCCCGCCGCGTGCTGAGCGCTATTCAg < 3:105217/149‑1 (MQ=255) gCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTCGCCCGCCGCGTGCTGAGCGCTATTCAgg < 1:45024/149‑1 (MQ=255) aCCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTCGCCCGCCGCGTGCTGAGCGCTATTCAGGacca > 3:269693/1‑149 (MQ=255) ccAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTCGCCCGCCGCGTGCTGAGCGCTATTCAGGaccac > 2:68663/1‑149 (MQ=255) gAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTCGCCCGCCGCGTGCTGAGCGCTATTCAGGACCACCTggg < 5:35714/149‑1 (MQ=255) agagC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTCGCCCGCCGCGTGCTGAGCGCTATTCAGGa < 6:60455/138‑1 (MQ=255) agagC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTCGCCCGCCGCGTGCTGAGCGCTATTCAGGa > 5:60455/1‑138 (MQ=255) gC‑GTgaagcccggctggttctgcttgtcgtcaggcttttcggacaggttgatgtagtacaggcccaggctgcggttgatgtcctcaacccgccattcgccaccctgctccagggcacggcccacgccagaccaggcgcggtccaggtcg > 7:1943‑M2/1‑4 (MQ=255) gC‑GTGAAGCCTGTGCCGCCCGTTACCAGGGTCGCCGGAGCACGGTGCGTGACACCGTGCATGTCACGGTCGAGAAAAACATCATCACCGTGGCTCCGCCCTATGTCGCCCGCCGCGTTATGAGCGCTATTCTGGACCACCTGGGCTAAg < 4:51985/149‑1 (MQ=255) gC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTCGCCCGCCGCGTGCTGAGCGCTATTCAg > 7:281538/1‑133 (MQ=255) gC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTCGCCCGCCGCGTGCTGAGCGCTATTCAg < 8:281538/133‑1 (MQ=255) gTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTCGCCCGCCGCGTGCTGAGCGCTATTCAGGACCACCTGGGCTAAGTg < 1:160033/149‑1 (MQ=255) | GAGCAGGGTGGCGAATGGCGGGTTGAGGACATCAACCGCAGCCTGGGCCTGTACTACATCAACCTGTCCGAAAAGCCTGACGACAAGCAGAACCAGCCGGGCTTCTTCAGCCGCCTGTTCGGCAGCGAGCCGACCAAGGAAGAGC‑GTGAAGCCCGTGCCGAGCGTTACCAGGTTCGCCTGAGCAAGGTGGGTGAGAGCGTGCAGGTCACGGTCGAGAAAAACATCAACACCGTGGCTCCGGCCGATGTCGCCCGCCGCGTGCTGAGCGCTATTCAGGACCACCTGGGCTAAGTG > NC_002947/1416462‑1416755 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |