New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1899371 =	38 (0.690)	3 (0.060)	3/236	NT	7.8%	intergenic (+441/‑79)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1899425 =	36 (0.710)					intergenic (+495/‑25)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase

CCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCGGCATCGTCATGAGC  >  NC_002947/1899226‑1899515                                                                                                                                                  |                                                                                                                                                   gttgatcgggtgctgtttgtcgccgcttatgttgcctaccttgccatgggcaaggctcatgacgatgccgcagcccacgcggcagtaggggctgacgctgcgtacttcgctgttggccatgggcgggctcctgtggaaaacgcaaAAAg                                                                                                                                                 >  1:97939‑M1/146‑149 (MQ=255) ccacagggatatcgcaaggcctgagggcggcgcagtacctgtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAg                                                                                                                                                 >  4:161696‑M2/53‑149 (MQ=255) CCACTGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAg                                                                                                                                                 >  3:44372‑M1/1‑149 (MQ=255) CCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAg                                                                                                                                                 <  2:111713‑M1/149‑1 (MQ=255)      tcgggtgcagcttgtcgccgctgatcttgccgaccttgccatcggcaacgctcatgacgatgccgcagcccacgccgcagtaggggcagacgctgcgtacttcgctgttggccatgggcgggctcctgtggaaaacgcaaAAAGG‑‑CGcc                                                                                                                                          >  4:114050‑M1/141‑149 (MQ=255)          cTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCgtgt                                                                                                                                      >  1:146555/1‑149 (MQ=255)              gccgccCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGcc                                                                                                                                  >  4:23630/1‑149 (MQ=255)                aaggcctgagggcggcgcagtacctgtgggagcgggcGTGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGcccc                                                                                                                                >  2:157365‑M2/38‑149 (MQ=255)                 gccCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAgg                                                                                                                                                >  4:150197/1‑134 (MQ=255)                 gccCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAgg                                                                                                                                                <  3:150197/134‑1 (MQ=255)                       aGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGc                                                                                                                          <  6:337905/148‑1 (MQ=255)                       aGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGc                                                                                                                          <  6:83997/148‑1 (MQ=255)                       aGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCa                                                                                                                         <  6:309911/149‑1 (MQ=255)                          ccTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCa                                                                                                                      <  2:146555/149‑1 (MQ=255)                                      cctgtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCACCGCTTGCATCAGCATGCCgggg                                                                                                           >  5:19643‑M2/16‑148 (MQ=255)                                               tcggcaacgctcatgacgatgccgcagcccacgccgcagtaggggcagacgctgcgtacttcgctgttggccatgggcgggctcctgtggaaaacgcaaAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGgcgc                                                                                                 >  8:197723‑M1/100‑149 (MQ=255)                                               gcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGgcgc                                                                                                 <  5:248483‑M2/143‑1 (MQ=255)                                                            cgAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGGCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTTCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGtttt                                                                                    <  4:13495/149‑1 (MQ=255)                                                             gAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTc                                                                                   <  5:261167/149‑1 (MQ=255)                                                               aaGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCca                                                                                 <  3:161696/149‑1 (MQ=255)                                                                    ccGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGa                                                                            <  6:19643/149‑1 (MQ=255)                                                                      ggTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAgc                                                                          <  1:157365/149‑1 (MQ=255)                                                                        tataGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGACCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCTACAGGAgc                                                                          <  1:111713/149‑1 (MQ=255)                                                                        tataGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAgccc                                                                        >  6:158279/1‑149 (MQ=255)                                                                                  ccATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGa                                                                            <  3:149079/135‑1 (MQ=255)                                                                                  ccATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGa                                                                            >  4:149079/1‑135 (MQ=255)                                                                                             tGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAgcc                                                                         <  2:349210/127‑1 (MQ=255)                                                                                               aTCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTTCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTAc                                                 >  2:328813/1‑149 (MQ=255)                                                                                               aTCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTAc                                                 >  6:297527/1‑149 (MQ=255)                                                                                                   aCCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAg                                             >  8:294436/1‑149 (MQ=255)                                                                                                   aCCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAg                                             >  5:258719/1‑149 (MQ=255)                                                                                                   aCCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAg                                             >  5:331162/1‑149 (MQ=255)                                                                                                    ccTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACg                                                <  3:23630/145‑1 (MQ=255)                                                                                                    ccTCAT‑CCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGgc                                                                                                   <  1:158513/93‑1 (MQ=255)                                                                                                    ccTCAT‑CCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGgc                                                                                                   >  2:158513/1‑93 (MQ=255)                                                                                                        aTCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGT‑‑CGCCGTGTTGCCCAGCTTGGATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCAACGGAGCCCGCCCATGGACAACAGCGAAGTACGCCGCGTCt                                        >  7:331197/1‑149 (MQ=255)                                                                                                            cgctgttggccatgggcgggctcctgtggaaaacgcaaAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGgc                                                                                                   >  8:297972‑M1/39‑86 (MQ=255)                                                                                                            cgctgttggccatgggcgggctcctgtggaaaacgcaaAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGgc                                                                                                   <  7:297972‑M1/48‑1 (MQ=255)                                                                                                               gcgttaaaCGTCGACACCCCTCACCAATGCACGACAAAGG‑‑CGACGTGTTGCCCCGCTTGCATCAGCATGCCGTGGCAGCCGGCGCCTTTTTGCTTTTTCCAAAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTa                                 <  8:331197/143‑1 (MQ=255)                                                                                                                 tGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACt                               >  6:100411/1‑149 (MQ=255)                                                                                                                   tCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTg                              <  6:331162/148‑1 (MQ=255)                                                                                                                     aaCGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTgcgg                           >  8:31913/1‑149 (MQ=255)                                                                                                                     aaCGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTgcg                            <  5:297527/148‑1 (MQ=255)                                                                                                                         tCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTg                       <  7:294436/149‑1 (MQ=255)                                                                                                                           gACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCTGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTggg                     >  8:313850/1‑149 (MQ=255)                                                                                                                              aGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTg                  <  5:158279/149‑1 (MQ=255)                                                                                                                                cccTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCg                >  1:334856/1‑149 (MQ=255)                                                                                                                                    caccacTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCACCTACTGCGGCGTGGGCTGCGGCAt            >  2:11667/1‑149 (MQ=255)                                                                                                                                          ttCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTa                                 <  6:271252/122‑1 (MQ=255)                                                                                                                                          ttCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTa                                 >  5:271252/1‑122 (MQ=255)                                                                                                                                          ttCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCGGCATCGTCAt      >  5:240917/1‑149 (MQ=255)                                                                                                                                              cGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCTGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCGGCATCGTCATGAGc  <  7:313850/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   CCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCGGCATCGTCATGAGC  >  NC_002947/1899226‑1899515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.