New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1899371 =	38 (0.690)	3 (0.060)	3/236	NT	7.8%	intergenic (+441/‑79)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1899425 =	36 (0.710)					intergenic (+495/‑25)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase

CGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCGGCATCGTCATGAGCGTTGCCGATGGCAAGGTCGGCAAGATCAGCGGCGACAAGCTGCACCCGAGCAACTTT  >  NC_002947/1899285‑1899572                                                                                                                                               |                                                                                                                                                    cgAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGGCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTTCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGtttt                                                                                                                                             <  4:13495/149‑1 (MQ=255)  gAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTc                                                                                                                                            <  5:261167/149‑1 (MQ=255)    aaGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCca                                                                                                                                          <  3:161696/149‑1 (MQ=255)         ccGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGa                                                                                                                                     <  6:19643/149‑1 (MQ=255)           ggTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAgc                                                                                                                                   <  1:157365/149‑1 (MQ=255)             tataGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGACCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCTACAGGAgc                                                                                                                                   <  1:111713/149‑1 (MQ=255)             tataGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAgccc                                                                                                                                 >  6:158279/1‑149 (MQ=255)                       ccATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGa                                                                                                                                     <  3:149079/135‑1 (MQ=255)                       ccATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGa                                                                                                                                     >  4:149079/1‑135 (MQ=255)                                  tGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAgcc                                                                                                                                  <  2:349210/127‑1 (MQ=255)                                    aTCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTTCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTAc                                                                                                          >  2:328813/1‑149 (MQ=255)                                    aTCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTAc                                                                                                          >  6:297527/1‑149 (MQ=255)                                        aCCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAg                                                                                                      >  5:331162/1‑149 (MQ=255)                                        aCCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAg                                                                                                      >  8:294436/1‑149 (MQ=255)                                        aCCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAg                                                                                                      >  5:258719/1‑149 (MQ=255)                                         ccTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACg                                                                                                         <  3:23630/145‑1 (MQ=255)                                             aTCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGT‑‑CGCCGTGTTGCCCAGCTTGGATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCAACGGAGCCCGCCCATGGACAACAGCGAAGTACGCCGCGTCt                                                                                                 >  7:331197/1‑149 (MQ=255)                                                    gcgttaaaCGTCGACACCCCTCACCAATGCACGACAAAGG‑‑CGACGTGTTGCCCCGCTTGCATCAGCATGCCGTGGCAGCCGGCGCCTTTTTGCTTTTTCCAAAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTa                                                                                          <  8:331197/143‑1 (MQ=255)                                                      tGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACt                                                                                        >  6:100411/1‑149 (MQ=255)                                                        tCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTg                                                                                       <  6:331162/148‑1 (MQ=255)                                                          aaCGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTgcgg                                                                                    >  8:31913/1‑149 (MQ=255)                                                          aaCGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTgcg                                                                                     <  5:297527/148‑1 (MQ=255)                                                              tCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTg                                                                                <  7:294436/149‑1 (MQ=255)                                                                gACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCTGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTggg                                                                              >  8:313850/1‑149 (MQ=255)                                                                   aGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTg                                                                           <  5:158279/149‑1 (MQ=255)                                                                     cccTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCg                                                                         >  1:334856/1‑149 (MQ=255)                                                                         caccacTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCACCTACTGCGGCGTGGGCTGCGGCAt                                                                     >  2:11667/1‑149 (MQ=255)                                                                               ttCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTa                                                                                          <  6:271252/122‑1 (MQ=255)                                                                               ttCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTa                                                                                          >  5:271252/1‑122 (MQ=255)                                                                               ttCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCGGCATCGTCAt                                                               >  5:240917/1‑149 (MQ=255)                                                                                   cGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCTGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCGGCATCGTCATGAGc                                                           <  7:313850/149‑1 (MQ=255)                                                                                             gcgccggctgccccggcatgctgatgcaagcggggcaacacggcgcctttTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCGGCATCGTCATGAGCGTTGCCGa                                                   >  8:197723‑M2/51‑149 (MQ=255)                                                                                               gccggctgccccggcatgctgatgcaagcggggcaacacggcgcctttTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCg                                                                                                                <  7:297972‑M2/38‑1 (MQ=255)                                                                                               gccggctgccccggcatgctgatgcaagcggggcaacacggcgcctttTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCg                                                                                                                >  8:297972‑M2/49‑86 (MQ=255)                                                                                               GCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCGGCATCGTCATGAGCGTTGCCGATg                                                 >  5:100411‑M1/1‑149 (MQ=255)                                                                                                CCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCGGCATCGTCATGAGCGTTGCCGATgg                                                >  7:31913‑M1/1‑149 (MQ=255)                                                                                                           cGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCGGCATCGTCATGAGCGTTGCCGATGGCAAGGTCGGCa                                     <  5:204654/149‑1 (MQ=255)                                                                                                                gCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCGGCATCGTCATGAGCGTTGCCGATGGCAAGGTCGGCAAGAt                                 >  6:143724/1‑148 (MQ=255)                                                                                                                     aGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCGGCATCGTCATGAGCGTTGCCGATGGCAAGGTCGGCAAGATCAgcg                            <  5:143724/148‑1 (MQ=255)                                                                                                                          gCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCGGCATCGTCATGAGCGTTGCCGATGGCAAGGTCGGCAAGATCAGCGGCGAc                       >  6:128793/1‑148 (MQ=255)                                                                                                                              gggCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCGGCATCGTCATGAGCGTTGCCGATGGCAAGGTCGGCAAGATCAGCGGCGACAAGCt                  >  2:133615/1‑149 (MQ=255)                                                                                                                                gCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGt                                                                                 <  8:38944/84‑1 (MQ=255)                                                                                                                                gCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGt                                                                                 >  7:38944/1‑84 (MQ=255)                                                                                                                                      ggcgcctttTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCGGCATCGTCATGAGCGTTGCCGATGGCAAGGTCGGCAAGATCAGCGGCGACAAGCTGCACCCGa          >  4:114050‑M2/10‑149 (MQ=255)                                                                                                                                           ctttTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCAGCCCCTACTGCCGCGTGGGCTGCGGCATCGTCATGAGCCTTGCCCATGGCAAGGTAGGCAACATAAGCGGCGACAAACAGCACCCGATCAAc     >  1:97939‑M2/5‑149 (MQ=255)                                                                                                                                               ttGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCGGCATCGTCATGAGCGTTGCCGATGGCAAGGTCGGCAAGATCAGCGGCGACAAGCTGCACCCGAGCAACttt  <  6:258719/148‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                    CGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGG‑‑CGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGCCCGCCCATGGCCAACAGCGAAGTACGCAGCGTCTGCCCCTACTGCGGCGTGGGCTGCGGCATCGTCATGAGCGTTGCCGATGGCAAGGTCGGCAAGATCAGCGGCGACAAGCTGCACCCGAGCAACTTT  >  NC_002947/1899285‑1899572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.