New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1923666	39 (0.700)	3 (0.060)	3/240	NT	6.3%	coding (374/795 nt)	PP_1723	2‑aminoethylphosphonate ABC transporter permease
	?	NC_002947	= 1923711	52 (1.000)					coding (329/795 nt)	PP_1723	2‑aminoethylphosphonate ABC transporter permease

AGCAGCTGCGCGGCGTCCATCAGGTCGCGCAGGTTGATGGCCTGCAGGTTGTTGGTGATGGCCCTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCG  >  NC_002947/1923519‑1923813                                                                                                                                                    |                                                                                                                                                     agcagcTGCGCGGCGTCCATCAGGTCGCGCAGGTTGATGGCCTGCAGGTTGTTGGTGATGGCCCTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATa                                                                                                                                                     >  8:157038/1‑149 (MQ=255) agcagcTGCGCGGCGTCCATCAGGTCGCGCAGGTTGATGGCCTGCAGGTTGTTGGTGATGGCCCTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATa                                                                                                                                                     <  7:110781/149‑1 (MQ=255)  gcagcTGCGCGGCGTCCATCAGGTCGCGCAGGTTGATGGCCTGCACGTTGTTGGTGATGGCCCAGTACATGAACGGCAGGGCGATGGTGAAGTAGCACCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATAc                                                                                                                                                    >  8:145360/1‑149 (MQ=255)         cgcgGCGTCCATCAGGTCGCGCAGGTTGATGGCCTGCAGGTTGTTGGTGATGGCCCTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTgca                                                                                                                                             <  6:132635/149‑1 (MQ=255)           cggcgTCCATCAGGTCGCGCAGGTTGATGGCCTGCCGGTTGTTGGTGATGGCCCTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTgcagc                                                                                                                                           <  6:180836/149‑1 (MQ=255)              cgTCCATCAGGTCGCGCAGGTTGATGGCCTGCAGGTTGTTGGTGATGGCCCTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCagcagc                                                                                                                                        >  5:237490/1‑149 (MQ=255)               gtgaaTCAGGTCGCGTAGTTTGATGTCCTGCAGGTTGTTGGGGATTGCCCTGTACATTAACTGCAGGGCGATGGTTAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGcc                                                                                                                                       <  4:33512/145‑1 (MQ=255)                             gcAGGTTGATGGCCTGTAGGTTGTTGGTGATGGCCCTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGAcacc                                                                                                                        >  2:324210/1‑149 (MQ=255)                                     aTGGCCTGCAGGTTGTTGGTGATGACCCTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACcggcgg                                                                                                                <  5:343462/149‑1 (MQ=255)                                              aGGTTGTTGGTGATGGCCCTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAa                                                                                                       >  5:74292‑M2/1‑148 (MQ=255)                                                    ttgGTGATGGCCCTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAatggca                                                                                                  >  1:324210‑M2/1‑142 (MQ=255)                                                        tGATGGCCCTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATtcgcggtcccgccggtggtgtcgtcggtggggctgctgcagctgtatggcagcggg                                                                                              <  8:187246‑M1/149‑57 (MQ=255)                                                         gATGGCCCTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTgc                                                                                                                                              <  4:51033/100‑1 (MQ=255)                                                         gATGGCCCTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTgc                                                                                                                                              >  3:51033/1‑100 (MQ=255)                                                              cccTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCaggatgagg                                                                                       <  7:157038/149‑1 (MQ=255)                                                               ccTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATtcgcggtcccgccggtggtgtcgtcggtggggctgctgcagctgtatggcagcgg                                                                                               <  4:680‑M1/141‑56 (MQ=255)                                                               ccTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATtcgcggtcccgccggtggtgtcgtcggtggggctgctgcagctgtatggcagcgg                                                                                               >  3:680‑M1/1‑86 (MQ=255)                                                                   tACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCaggatgaggatg                                                                                    <  7:212913/147‑1 (MQ=255)                                                                   tACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCaggatgaggatg                                                                                    <  6:237490/147‑1 (MQ=255)                                                                      aTGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAa                                                                                                       <  3:3090‑M2/125‑2 (MQ=255)                                                                      aTGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAa                                                                                                       >  4:3090‑M2/1‑124 (MQ=255)                                                                                    gATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGcc                                                                 >  6:61613/1‑149 (MQ=255)                                                                                           aaGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCggg                                                            >  5:52310/1‑147 (MQ=255)                                                                                              tAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCcg                                                                <  2:219087/140‑1 (MQ=255)                                                                                              tAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCcg                                                                >  1:219087/1‑140 (MQ=255)                                                                                                          aGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGcacca                                            <  5:61613/148‑1 (MQ=255)                                                                                                           ggATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTg                                                       >  7:144769/1‑136 (MQ=255)                                                                                                           ggATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTg                                                       <  8:144769/136‑1 (MQ=255)                                                                                                           ggATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGcaccac                                           >  5:161945/1‑148 (MQ=255)                                                                                                            gATCCACGGTGTGCCGACCATGGCCTTCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGcaccac                                           >  1:314799/1‑147 (MQ=255)                                                                                                            gATCCACGGTGTGCCGACCATGGCCTTCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGcaccac                                           <  2:314799/147‑1 (MQ=255)                                                                                                            gATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCCGCCACCGACGCCACCACCGGCGGGCCCCCGAATGGCAGAAGGATGAGGATGTTCATCACCGCGTCGAGCCGCGGGAAGTGGTAATgaccaag                                           >  1:98716/1‑142 (MQ=255)                                                                                                            gATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGaa                                                          <  5:101364/132‑1 (MQ=255)                                                                                                            gATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGaa                                                          >  6:101364/1‑132 (MQ=255)                                                                                                            gATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACg                                          >  2:50450/1‑148 (MQ=255)                                                                                                                 aCGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAAcag                                     >  5:309196/1‑148 (MQ=255)                                                                                                                             ccATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATc                        <  2:98716/149‑1 (MQ=255)                                                                                                                                  gCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGcac                   <  6:309196/149‑1 (MQ=255)                                                                                                                                   ccATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGcac                   >  1:52402/1‑148 (MQ=255)                                                                                                                                      tCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTg                                                       <  4:31476/109‑1 (MQ=255)                                                                                                                                      tCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTg                                                       >  3:31476/1‑109 (MQ=255)                                                                                                                                        ggCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGa             <  6:161945/149‑1 (MQ=255)                                                                                                                                          cccGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAatggcagcgggccgatggccatggtcggcacaccgtggatcctgatcggctgctacttcaccatcgccctgccgttcatgtacagggccatca           <  8:187246‑M2/149‑94 (MQ=255)                                                                                                                                          cccGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGa             >  6:94956/1‑147 (MQ=255)                                                                                                                                           ccGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAatggcagcgggccgatggccatggtcggcacaccgtggatcctgatcggctgctacttcaccatcgccctgccgttcatgtacagg                  >  3:680‑M2/1‑55 (MQ=255)                                                                                                                                           ccGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAatggcagcgggccgatggccatggtcggcacaccgtggatcctgatcggctgctacttcaccatcgccctgccgttcatgtacagg                  <  4:680‑M2/141‑87 (MQ=255)                                                                                                                                            cGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGcacc                                             >  1:184956/1‑113 (MQ=255)                                                                                                                                            cGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGcacc                                             <  2:184956/113‑1 (MQ=255)                                                                                                                                              cTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTgg                               >  7:219203/1‑125 (MQ=255)                                                                                                                                              cTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTgg                               <  8:219203/125‑1 (MQ=255)                                                                                                                                              cTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGAcagcag       >  5:321102/1‑149 (MQ=255)                                                                                                                                               tGCCATtcgcggtcccgccggtggtgtcgtcggtggggctgctgcagctgtatggcagcgggccgatggccatggtcggcacaccgtggatcctgatcggctgctacttcaccatcgccctgccgttcatgtacagggccatcaccaa        >  1:324210‑M1/1‑6 (MQ=255)                                                                                                                                               tGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCTGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGAcagcag       >  4:119264/1‑148 (MQ=255)                                                                                                                                                    ttcgcggtcccgccggtggtgtcgtcggtggggctgctgcagctgtatggcagcgggccgatggccatggtcggcacaccgtggatcctgatcggctgctacttcaccatcgccctgccgttcatgtacagggccatcaccaacaacct  >  5:74292‑M1/1‑1 (MQ=255)                                                                                                                                                    ttcgcggtcccgccggtggtgtcgtcggtggggctgctgcagctgtatggcagcgggccgatggccatggtcggcacaccgtggatcctgatcggctgctacttcaccatcgccctgccgttcat                          <  3:3090‑M1/125‑125 (MQ=255)                                                                                                                                                    ttcgcggtcccgccggtggtgtcgtcggtggggctgctgcagctgtatggcagcgggccgatggccatggtcggcacaccgtggatcctgatcggctgctacttcaccatcgccctgccgttcat                          >  4:3090‑M1/1‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     AGCAGCTGCGCGGCGTCCATCAGGTCGCGCAGGTTGATGGCCTGCAGGTTGTTGGTGATGGCCCTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCG  >  NC_002947/1923519‑1923813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.