| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1923666 | 39 (0.700) | 3 (0.060) | 3/240 | NT | 6.3% | coding (374/795 nt) | PP_1723 | 2‑aminoethylphosphonate ABC transporter permease |
| ? | NC_002947 | = 1923711 | 52 (1.000) | coding (329/795 nt) | PP_1723 | 2‑aminoethylphosphonate ABC transporter permease | |||||
AGGTTGTTGGTGATGGCCCTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCAGCAGCGACTGGCCGAAGGCCGCGAGGAA > NC_002947/1923564‑1923856 | aGGTTGTTGGTGATGGCCCTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAa > 5:74292‑M2/1‑148 (MQ=255) ttgGTGATGGCCCTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAatggca > 1:324210‑M2/1‑142 (MQ=255) cccTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCaggatgagg < 7:157038/149‑1 (MQ=255) tACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCaggatgaggatg < 7:212913/147‑1 (MQ=255) tACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCaggatgaggatg < 6:237490/147‑1 (MQ=255) aTGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAa > 4:3090‑M2/1‑124 (MQ=255) aTGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAa < 3:3090‑M2/125‑2 (MQ=255) gATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGcc > 6:61613/1‑149 (MQ=255) aaGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCggg > 5:52310/1‑147 (MQ=255) tAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCcg < 2:219087/140‑1 (MQ=255) tAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCcg > 1:219087/1‑140 (MQ=255) aGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGcacca < 5:61613/148‑1 (MQ=255) ggATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTg < 8:144769/136‑1 (MQ=255) ggATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTg > 7:144769/1‑136 (MQ=255) ggATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGcaccac > 5:161945/1‑148 (MQ=255) gATCCACGGTGTGCCGACCATGGCCTTCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGcaccac < 2:314799/147‑1 (MQ=255) gATCCACGGTGTGCCGACCATGGCCTTCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGcaccac > 1:314799/1‑147 (MQ=255) gATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCCGCCACCGACGCCACCACCGGCGGGCCCCCGAATGGCAGAAGGATGAGGATGTTCATCACCGCGTCGAGCCGCGGGAAGTGGTAATgaccaag > 1:98716/1‑142 (MQ=255) gATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGaa < 5:101364/132‑1 (MQ=255) gATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGaa > 6:101364/1‑132 (MQ=255) gATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACg > 2:50450/1‑148 (MQ=255) aCGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAAcag > 5:309196/1‑148 (MQ=255) ccATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATc < 2:98716/149‑1 (MQ=255) gCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGcac < 6:309196/149‑1 (MQ=255) ccATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGcac > 1:52402/1‑148 (MQ=255) tCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTg > 3:31476/1‑109 (MQ=255) tCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTg < 4:31476/109‑1 (MQ=255) ggCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGa < 6:161945/149‑1 (MQ=255) cccGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAatggcagcgggccgatggccatggtcggcacaccgtggatcctgatcggctgctacttcaccatcgccctgccgttcatgtacagggccatca < 8:187246‑M2/149‑94 (MQ=255) cccGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGa > 6:94956/1‑147 (MQ=255) ccGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAatggcagcgggccgatggccatggtcggcacaccgtggatcctgatcggctgctacttcaccatcgccctgccgttcatgtacagg > 3:680‑M2/1‑55 (MQ=255) ccGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAatggcagcgggccgatggccatggtcggcacaccgtggatcctgatcggctgctacttcaccatcgccctgccgttcatgtacagg < 4:680‑M2/141‑87 (MQ=255) cGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGcacc < 2:184956/113‑1 (MQ=255) cGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGcacc > 1:184956/1‑113 (MQ=255) cTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTgg > 7:219203/1‑125 (MQ=255) cTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTgg < 8:219203/125‑1 (MQ=255) cTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGAcagcag > 5:321102/1‑149 (MQ=255) tGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCTGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGAcagcag > 4:119264/1‑148 (MQ=255) cAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAgcgcgc < 6:52310/149‑1 (MQ=255) cagcagCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACg > 5:99891/1‑148 (MQ=255) cagcC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAAc < 5:67659/100‑1 (MQ=255) cagcC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAAc > 6:67659/1‑100 (MQ=255) cc‑ccACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACca > 4:121441/1‑149 (MQ=255) ccACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGt < 3:205414/81‑1 (MQ=255) aCCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGAt > 5:369794/1‑107 (MQ=255) aCCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGAt < 6:369794/107‑1 (MQ=255) ccGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCagcagc > 8:108269/1‑149 (MQ=255) accaccGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCAGCAGCGACTGGcc > 6:311399/1‑149 (MQ=255) accaccGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCAGCAGCGACTGGcc > 6:317065/1‑149 (MQ=255) accaccGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCAGCAGCGACTGGcc < 5:94956/149‑1 (MQ=255) ccaccGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCAGCAGCGACTGGc < 2:159952/147‑1 (MQ=255) ccaccGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCAGCAGCGACTGGc > 1:159952/1‑147 (MQ=255) caccGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTTATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCAGCAGCGACTGGCCg > 6:275268/1‑148 (MQ=255) caccGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCAGCAGCGACTGGc < 8:259231/146‑1 (MQ=255) caccGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCAGCAGCGACTGGc > 7:259231/1‑146 (MQ=255) caccGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCAGCAGCGACTGGCCg > 5:139476/1‑148 (MQ=255) ccGGCTGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCAGCAGCGACTGGCCGAAg < 3:119264/149‑1 (MQ=255) ccGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCAGCAGCGACTGGCCGAAg > 1:36262/1‑149 (MQ=255) gcggGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCAGCAGCGACTGGCCGAAGGcc < 7:145360/149‑1 (MQ=255) gcgAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGGCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCAGCAGCGACTGGCCGAAGGCCGCGAGGaa < 5:311399/149‑1 (MQ=255) gcgAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCAGCAGCGACTGGCCGAAGGCCGCGAgg > 4:208026/1‑147 (MQ=255) gcgAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCAGCAGCGACTGGCCGAAGGCCGCGAGGaa < 5:317065/149‑1 (MQ=255) cgAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCTAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCAGCAGCGACTGGCCGaa < 6:293709/136‑1 (MQ=255) cgAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCAGCAGCGACTGGCCGaa > 5:293709/1‑136 (MQ=255) | AGGTTGTTGGTGATGGCCCTGTACATGAACGGCAGGGCGATGGTGAAGTAGCAGCCGATCAGGATCCACGGTGTGCCGACCATGGCCATCGGCCCGCTGCCATACAGCTGCAGCAGCC‑CCACCGACGACACCACCGGCGGGACCGCGAATGGCAGCAGGATGAGGATGTTCATCAGCGCGTCGAGCCGCGGGAAGTGGTAATGCACCACGAACAGCAGTGGCAAGATCAGCACCACCGACAGCAGCAGCGCGCCTACGCACACCAGCAGCGACTGGCCGAAGGCCGCGAGGAA > NC_002947/1923564‑1923856 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |