New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1937410 =	50 (0.900)	4 (0.080)	4/242	NT	8.8%	coding (274/747 nt)	PP_1737	hypothetical protein
	?	NC_002947	1937440 =	36 (0.690)					coding (244/747 nt)	PP_1737	hypothetical protein

ATGCTGGTCGCCGGGTCCCACAGCCCACCCACGCCGATGATCGTGTTGAACATCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTACACGTTCAGCGCCTGCAG  >  NC_002947/1937262‑1937554                                                                                                                                                      |                                                                                                                                                 aTGCTGGTCGCCGGGTCCCACAGCCCACCCACGCCGATGATCGTGTTGAACATCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCt                                                                                                                                                  >  2:286578/1‑149 (MQ=255)          gCCGGGTCCCACAGCCCACCCACGCCGATGATCGTGTTGAACATCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGt                                                                                                                                         >  6:75498/1‑149 (MQ=255)               gTCCCACAGCCCACCCACGCCGATGATCGTGTTGAACATCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCa                                                                                                                                    <  5:75498/149‑1 (MQ=255)                    acaGCCCACCCACGCCGATGATCGTGTTGAACATCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAg                                                                                                                               >  4:252358/1‑149 (MQ=255)                               acGCCGATGATCGTGTTGAACATCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGa                                                                                                                     >  5:111301/1‑148 (MQ=255)                               acGCCGATGATCGTGTTGAACATCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGAc                                                                                                                    <  2:336588/149‑1 (MQ=255)                                cGCCGATGATCGTGTTGAACATCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGTCACGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGAc                                                                                                                    <  1:286578/149‑1 (MQ=255)                                   cGATGATCGTGTTGAACATCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATAc                                                                                                                >  1:338272/1‑149 (MQ=255)                                                gAACATCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTggg                                                                                                                         <  8:89084/127‑1 (MQ=255)                                                gAACATCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTggg                                                                                                                         >  7:89084/1‑127 (MQ=255)                                                  gtgtacgacccgctggagtcgatcaaccggcgcatctaccacttcaactaccgattggaccaatgggtgctgctgccgctggtgaatggctatcagtatgTCACCCCCGTGCGCACGAAGCTTGGGGTGACATAc                                                                                                                <  2:214078‑M1/35‑1 (MQ=255)                                                  gtgtacgacccgctggagtcgatcaaccggcgcatctaccacttcaactaccgattggaccaatgggtgctgctgccgctggtgaatggctatcagtatgTCACCCCCGTGCGCACGAAGCTTGGGGTGACATAc                                                                                                                >  1:214078‑M1/101‑135 (MQ=255)                                                    aTCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCAtt                                                                                                     >  3:231083/1‑143 (MQ=255)                                                    aTCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCAtt                                                                                                     <  4:231083/143‑1 (MQ=255)                                                     tCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGc                                                                                              <  2:338272/149‑1 (MQ=255)                                                           gcgcgGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGgcagc                                                                                        <  3:252358/149‑1 (MQ=255)                                                             gcgGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCTCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGaa                                                                                                                                <  6:114381/107‑1 (MQ=255)                                                             gcgGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGaa                                                                                                                                >  5:114381/1‑107 (MQ=255)                                                               ggTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGa                                                                                                                     >  4:334276/1‑116 (MQ=255)                                                               ggTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGa                                                                                                                     <  3:334276/116‑1 (MQ=255)                                                                      gatcaaccggcgcatctaccacttcaactaccgattggaccaatgggtgctgctgccgctggtgaatggctatcagtatgTCACCCCCGTGCGCACGAAGCTTGGGGTGAc                                                                                                                    <  6:282594‑M1/31‑1 (MQ=255)                                                                      gatcaaccggcgcatctaccacttcaactaccgattggaccaatgggtgctgctgccgctggtgaatggctatcagtatgTCACCCCCGTGCGCACGAAGCTTGGGGTGAc                                                                                                                    >  5:282594‑M1/81‑111 (MQ=255)                                                                           cGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTggg                                                                                                                         >  1:170652/1‑100 (MQ=255)                                                                           cGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTggg                                                                                                                         <  2:170652/100‑1 (MQ=255)                                                                                gcTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCgg                                                                   >  3:124174/1‑149 (MQ=255)                                                                                       tttGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTg                                                             >  2:26083/1‑148 (MQ=255)                                                                                       tttGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACACCCGTGCGCACGAAGATTGGGGTGACATACTGATAGACATTCACCACCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTg                                                             >  6:112714/1‑148 (MQ=255)                                                                                          gAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGt                                                                           <  4:283231/131‑1 (MQ=255)                                                                                          gAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGt                                                                           >  3:283231/1‑131 (MQ=255)                                                                                            gCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCATGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAg                                                                                                          <  7:170558/98‑1 (MQ=255)                                                                                            gCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAg                                                                                                          >  8:170558/1‑98 (MQ=255)                                                                                             cTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTgg                                                       >  4:70817/1‑148 (MQ=255)                                                                                                cAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGtt                                                              <  7:56454/138‑1 (MQ=255)                                                                                                cAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGtt                                                              >  8:56454/1‑138 (MQ=255)                                                                                                    acGCTGGTGAACAGGT‑TCGGCACATCTCCAAGGGTGTTGAAGAAGTTTCTCACCCCCGTGCGCACGAAGCTTGGGGTGa                                                                                                                     <  3:243722/79‑1 (MQ=255)                                                                                                    aagCTGTTGAAAAGGT‑TCGGCACATCGCCAAGCTTGTTGAAGAAGTTGCTCACCCACGTGCGCACGAAGCTTGGGGTGa                                                                                                                     >  4:243722/3‑79 (MQ=255)                                                                                                     cGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCATCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATgcgc                                              >  3:165518/1‑149 (MQ=255)                                                                                                                        gCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGc                            >  6:56492/1‑149 (MQ=255)                                                                                                                         cacaTCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGgcag                                                                                         <  1:79082/87‑1 (MQ=255)                                                                                                                         cacaTCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGgcag                                                                                         >  2:79082/1‑87 (MQ=255)                                                                                                                         cacaTCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCg                           <  1:26083/149‑1 (MQ=255)                                                                                                                             tCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGACGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTc                       <  1:49875/149‑1 (MQ=255)                                                                                                                             tCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTc                       <  5:56492/149‑1 (MQ=255)                                                                                                                             tCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTc                       >  6:97210/1‑149 (MQ=255)                                                                                                                               gCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAg                                                                                               <  3:316972/75‑1 (MQ=255)                                                                                                                               gCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAg                                                                                               >  4:316972/1‑75 (MQ=255)                                                                                                                               gCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCg                      >  3:286259/1‑148 (MQ=255)                                                                                                                                ccAAGGTTGTTGAAGAAGTTGCTCATCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTa                    <  4:165518/149‑1 (MQ=255)                                                                                                                                 cAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTac                   <  5:97210/149‑1 (MQ=255)                                                                                                                                  aaGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTaca                  <  4:124174/149‑1 (MQ=255)                                                                                                                                      ttgttgAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGTTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTACACGtt              <  5:112714/149‑1 (MQ=255)                                                                                                                                      ttgttgAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTACACGtt              >  7:4795/1‑149 (MQ=255)                                                                                                                                             agaagTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTACACGTTCAgcgca       >  8:104789/1‑148 (MQ=255)                                                                                                                                              gaagTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACTAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTACACGTTCAGCGCCt      >  1:23731/1‑149 (MQ=255)                                                                                                                                               aagTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGaa                                                           >  6:10698/1‑95 (MQ=255)                                                                                                                                                  ttGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTACACGTTCAGCGCCTGCAg  >  8:240613/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                 ATGCTGGTCGCCGGGTCCCACAGCCCACCCACGCCGATGATCGTGTTGAACATCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTACACGTTCAGCGCCTGCAG  >  NC_002947/1937262‑1937554

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.