New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1937410 =	50 (0.900)	4 (0.080)	4/242	NT	8.8%	coding (274/747 nt)	PP_1737	hypothetical protein
	?	NC_002947	1937440 =	36 (0.690)					coding (244/747 nt)	PP_1737	hypothetical protein

ACGCCGATGATCGTGTTGAACATCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTACACGTTCAGCGCCTGCAGGGTTGAGCGCTCGAACTC  >  NC_002947/1937292‑1937572                                                                                                                                                      |                                                                                                                                     acGCCGATGATCGTGTTGAACATCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGAc                                                                                                                                      <  2:336588/149‑1 (MQ=255)  cGCCGATGATCGTGTTGAACATCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGTCACGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGAc                                                                                                                                      <  1:286578/149‑1 (MQ=255)     cGATGATCGTGTTGAACATCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATAc                                                                                                                                  >  1:338272/1‑149 (MQ=255)                    gtgtacgacccgctggagtcgatcaaccggcgcatctaccacttcaactaccgattggaccaatgggtgctgctgccgctggtgaatggctatcagtatgTCACCCCCGTGCGCACGAAGCTTGGGGTGACATAc                                                                                                                                  >  1:214078‑M1/101‑135 (MQ=255)                    gtgtacgacccgctggagtcgatcaaccggcgcatctaccacttcaactaccgattggaccaatgggtgctgctgccgctggtgaatggctatcagtatgTCACCCCCGTGCGCACGAAGCTTGGGGTGACATAc                                                                                                                                  <  2:214078‑M1/35‑1 (MQ=255)                      aTCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCAtt                                                                                                                       <  4:231083/143‑1 (MQ=255)                      aTCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCAtt                                                                                                                       >  3:231083/1‑143 (MQ=255)                       tCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGc                                                                                                                <  2:338272/149‑1 (MQ=255)                             gcgcgGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGgcagc                                                                                                          <  3:252358/149‑1 (MQ=255)                                        gatcaaccggcgcatctaccacttcaactaccgattggaccaatgggtgctgctgccgctggtgaatggctatcagtatgTCACCCCCGTGCGCACGAAGCTTGGGGTGAc                                                                                                                                      <  6:282594‑M1/31‑1 (MQ=255)                                        gatcaaccggcgcatctaccacttcaactaccgattggaccaatgggtgctgctgccgctggtgaatggctatcagtatgTCACCCCCGTGCGCACGAAGCTTGGGGTGAc                                                                                                                                      >  5:282594‑M1/81‑111 (MQ=255)                                                  gcTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCgg                                                                                     >  3:124174/1‑149 (MQ=255)                                                         tttGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTg                                                                               >  2:26083/1‑148 (MQ=255)                                                         tttGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACACCCGTGCGCACGAAGATTGGGGTGACATACTGATAGACATTCACCACCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTg                                                                               >  6:112714/1‑148 (MQ=255)                                                            gAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGt                                                                                             <  4:283231/131‑1 (MQ=255)                                                            gAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGt                                                                                             >  3:283231/1‑131 (MQ=255)                                                              gCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCATGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAg                                                                                                                            <  7:170558/98‑1 (MQ=255)                                                              gCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAg                                                                                                                            >  8:170558/1‑98 (MQ=255)                                                               cTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTgg                                                                         >  4:70817/1‑148 (MQ=255)                                                                  cAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGtt                                                                                <  7:56454/138‑1 (MQ=255)                                                                  cAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGtt                                                                                >  8:56454/1‑138 (MQ=255)                                                                       cGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCATCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATgcgc                                                                >  3:165518/1‑149 (MQ=255)                                                                                          gCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGc                                              >  6:56492/1‑149 (MQ=255)                                                                                           cacaTCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGgcag                                                                                                           >  2:79082/1‑87 (MQ=255)                                                                                           cacaTCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGgcag                                                                                                           <  1:79082/87‑1 (MQ=255)                                                                                           cacaTCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCg                                             <  1:26083/149‑1 (MQ=255)                                                                                               tCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGACGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTc                                         <  1:49875/149‑1 (MQ=255)                                                                                               tCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTc                                         >  6:97210/1‑149 (MQ=255)                                                                                               tCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTc                                         <  5:56492/149‑1 (MQ=255)                                                                                                 gCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAg                                                                                                                 <  3:316972/75‑1 (MQ=255)                                                                                                 gCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAg                                                                                                                 >  4:316972/1‑75 (MQ=255)                                                                                                 gCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCg                                        >  3:286259/1‑148 (MQ=255)                                                                                                  ccAAGGTTGTTGAAGAAGTTGCTCATCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTa                                      <  4:165518/149‑1 (MQ=255)                                                                                                   cAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTac                                     <  5:97210/149‑1 (MQ=255)                                                                                                    aaGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTaca                                    <  4:124174/149‑1 (MQ=255)                                                                                                        ttgttgAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGTTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTACACGtt                                <  5:112714/149‑1 (MQ=255)                                                                                                        ttgttgAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTACACGtt                                >  7:4795/1‑149 (MQ=255)                                                                                                               agaagTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTACACGTTCAgcgca                         >  8:104789/1‑148 (MQ=255)                                                                                                                gaagTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACTAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTACACGTTCAGCGCCt                        >  1:23731/1‑149 (MQ=255)                                                                                                                 aagTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGaa                                                                             >  6:10698/1‑95 (MQ=255)                                                                                                                   gtatgtcaccccaagcttcgtgcgcacgggggtgaCATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTacac                                   <  2:214078‑M2/100‑1 (MQ=255)                                                                                                                   gtatgtcaccccaagcttcgtgcgcacgggggtgaCATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTacac                                   >  1:214078‑M2/36‑135 (MQ=255)                                                                                                                    ttGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTACACGTTCAGCGCCTGCAg                    >  8:240613/1‑149 (MQ=255)                                                                                                                       gtcaccccaagcttcgtgcgcacgggggtgaCATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATc                                                       >  5:282594‑M2/32‑111 (MQ=255)                                                                                                                       gtcaccccaagcttcgtgcgcacgggggtgaCATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATc                                                       <  6:282594‑M2/80‑1 (MQ=255)                                                                                                                         CACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTACACGTTCAGCGCCTGCAGGGtt                <  1:275730‑M1/148‑1 (MQ=255)                                                                                                                          ACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTACACGTTCAGCGCCTGCAGGGtt                >  8:4795‑M1/1‑147 (MQ=255)                                                                                                                           CCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTACACGTTCAGCGCCTGCAGGGTTGAg             >  3:70817‑M1/1‑149 (MQ=255)                                                                                                                                   cgcACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTACACGTTCAGCGCCTGCAGGGTTGAGCGCTCGa      <  2:275730/148‑1 (MQ=255)                                                                                                                                      aCGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTACACGTTCAGCGCCTGCAGGGTTGAGCGCTCGAACTc  >  1:153091/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                     ACGCCGATGATCGTGTTGAACATCAGTCGCGCGGTGATTTCTGCCGAGCGCTTGGCTTTGAGCTGCAACACGCTGTTGAACAGGT‑TCGGCACATCGCCAAGGTTGTTGAAGAAGTTGCTCACCCCCGTGCGCACGAAGCTTGGGGTGACATACTGATAGCCATTCACCAGCGGCAGCAGCACCCATTGGTCCAATCGGTAGTTGAAGTGGTAGATGCGCCGGTTGATCGACTCCAGCGGGTCGTACACGTTCAGCGCCTGCAGGGTTGAGCGCTCGAACTC  >  NC_002947/1937292‑1937572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.