New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2117745 =	43 (0.780)	4 (0.080)	4/246	NT	8.5%	coding (1421/2466 nt)	PP_1884	hypothetical protein
	?	NC_002947	2117773 =	45 (0.850)					coding (1449/2466 nt)	PP_1884	hypothetical protein

TATAAGCACAAAATATACCCCAAACAGGACGGTTCGTTTAAATTTGAAGGGGACCCCTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGCCTGT  >  NC_002947/2117597‑2117893                                                                                                                                                     |                                                                                                                                                       tataAGCACAAAATATACCCCAAACAGGACGGTTCGTTTAAATTTGAAGGGGACCCCTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATcg                                                                                                                                                        <  2:333497/149‑1 (MQ=255) ggtcagctgtggagcgacgccgccaaaacaggcaatgtcgcggggcatgtgccgctcgcctgcgagtatcgcgccaccaaagttcagtttgatggtcttatcgatcaattcctccatgtacaggtctaaacgaaggtccttggcgagtg                                                                                                                                                        <  4:325090‑M1/1‑1 (MQ=255) ggtcagctgtggagcgacgccgccaaaacaggcaatgtcgcggggcatgtgccgctcgcctgcgagtatcgcgccaccaaagttcagtttgatggtcttatcgatcaattcctccatgtacaggtctaaacgaaggtccttggcgagtg                                                                                                                                                        <  4:159637‑M1/1‑1 (MQ=255)  gtcagctgtggagcgacgccgccaaaacaggcaatgtcgcggggcatgtgccgctcgcctgcgagtatcgcgccaccaaagttcagtttgatggtcttatcgatcaattcctccatgtacaggtctaaacgaaggtccttggcgagtGc                                                                                                                                                       <  3:75004‑M1/2‑1 (MQ=255)    aaGCACAAAATATACCCCAAACAGGACGGTTCGTTTAAATTTGAAGGGGACCCCTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCgg                                                                                                                                                     >  3:208705/1‑149 (MQ=255)     agctgtggagcgacgccgccaaaacaggcaatgtcgcggggcatgtgccgctcgcctgcgagtatcgcgccaccaaagttcagtttgatggtcttatcgatcaattcctccatgtacaggtctaaacgaaggtccttggcgagtGCgg                                                                                                                                                     >  4:162188‑M1/145‑148 (MQ=255)         caAAATATACCCCAAACAGGACGGTTCGTTTAAATTTGAAGGGGACCCCTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGccccc                                                                                                                                                <  1:47463/149‑1 (MQ=255)          aaaaTATACCCCAAACAGGACGGTTCGTTTAAATTTGAAGGGGACCCCTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCt                                                                                                                                               >  8:137136/1‑149 (MQ=255)                     cAAACAGGACGGTTCGTTTAAATTTGAAGGGGACCCCTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCgca                                                                                                                                        <  3:45560/145‑1 (MQ=255)                     cAAACAGGACGGTTCGTTTAAATTTGAAGGGGACCCCTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCgca                                                                                                                                        >  4:45560/1‑145 (MQ=255)                         cAGGACGGTTCGTTTAAATTTGAAGGGGACCCCTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑c                                                                                                                              >  5:91892/1‑149 (MQ=255)                                gcaatgtcgcggggcatgtgccgctcgcctgcgagtatcgcgccaccaaagttcagtttgatggtcttatcgatcaattcctccatgtacaggtctaaacgaaggtccttggcgagtGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTc                                                                                                                       <  6:97973‑M1/32‑1 (MQ=255)                                      ttAAATTTGAAGGGGACCCCTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAg                                                                                                                 >  1:352953/1‑149 (MQ=255)                                          aTTTGAAGGGGACCCCTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGAc                                                                                                              <  6:253262/148‑1 (MQ=255)                                                aGGGGACCCCTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGtt                                                                                                       <  5:130344/149‑1 (MQ=255)                                                       cccTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAgg                                                                                                                <  1:58091/133‑1 (MQ=255)                                                       cccTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAgg                                                                                                                >  2:58091/1‑133 (MQ=255)                                                       cccTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCtt                                                                                                           >  4:201572/1‑138 (MQ=255)                                                       cccTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCtt                                                                                                           <  3:201572/138‑1 (MQ=255)                                                                gatcagatcaGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATgga                                                                                       <  6:61230/149‑1 (MQ=255)                                                                     gatcagCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAAt                                                                                  <  4:208705/149‑1 (MQ=255)                                                                       tcagCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGATGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAAtt                                                                                 >  6:29350/1‑148 (MQ=255)                                                                          gcgcGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATc                                                                             >  3:284190/1‑149 (MQ=255)                                                                                  aGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATc                                                                             >  5:175733/1‑141 (MQ=255)                                                                                  aGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATc                                                                             <  6:175733/141‑1 (MQ=255)                                                                                  aGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGAc                                                                     >  7:51176/1‑149 (MQ=255)                                                                                     cTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCAt                                                                  >  2:244242/1‑149 (MQ=255)                                                                                       ttttCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCCCTCGCCAAGGACCTTCGTGTAGCCCTGTACATGGAGGAATTGATCGATATGCCCATc                                                                 >  6:47188/1‑148 (MQ=255)                                                                                       ttttCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATc                                                                 >  2:59150/1‑148 (MQ=255)                                                                                          tCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAAc                                                             >  4:205509/1‑149 (MQ=255)                                                                                                aCTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACt                                                       >  1:31072/1‑149 (MQ=255)                                                                                                 aatctgggAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACtt                                                      <  1:207646/144‑1 (MQ=255)                                                                                                     ggggAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTtgg                                                   <  6:91892/148‑1 (MQ=255)                                                                                                     ggggAGTTGCAGCGCCGAATGTTTCAATTGTCGCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTtgg                                                   <  2:235774/148‑1 (MQ=255)                                                                                                       ggAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACAGAAcct                                                      >  2:207646/1‑141 (MQ=255)                                                                                                         tgTTGCAGAGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGTCCCCCTTGCCGAAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGgcg                                              <  7:283003/148‑1 (MQ=255)                                                                                                          gTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGgcgc                                             >  3:159637/1‑149 (MQ=255)                                                                                                           ttGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGgcgc                                             >  5:113137/1‑148 (MQ=255)                                                                                                           ttGCAGAGCCGAATGTTTCATTTGTCTCGCTTAGCTCCGATCGCGGCACCCTTGCCGCAGCAAGAG‑‑CCGCAATCGCCAAGGACCTTCGTGTAGACCTGTACATGGAGGAATTGATCGAATATCCCATAAAACTGAACTTtgtgggag                                              >  8:283003/1‑141 (MQ=255)                                                                                                               aGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATa                                         <  7:137136/148‑1 (MQ=255)                                                                                                                gcgcCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATaa                                                                        >  5:304705/1‑116 (MQ=255)                                                                                                                gcgcCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATaa                                                                        <  6:304705/116‑1 (MQ=255)                                                                                                                          tttCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAg                             >  4:75004/1‑149 (MQ=255)                                                                                                                              aTTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCgg                          >  5:133076/1‑148 (MQ=255)                                                                                                                                   tctcGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAAGTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATg                    >  3:22602/1‑149 (MQ=255)                                                                                                                                   tctcGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATg                    >  1:166971/1‑149 (MQ=255)                                                                                                                                    gaaggtccttggcgagtGCGGCTC‑‑TTGCTGCGGCAAGGGGGCCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGc                   <  5:97973‑M1/132‑1 (MQ=255)                                                                                                                                     tcGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGcc                  >  4:256856/1‑149 (MQ=255)                                                                                                                                         tccttggcgagtGCGGCTC‑‑TTGCTGCGGCAAGGGGGCCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCg                           <  1:146327‑M1/124‑1 (MQ=255)                                                                                                                                         tccttggcgagtGCGGCTC‑‑TTGCTGCGGCAAGGGGGCCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCg                           >  2:146327‑M1/13‑136 (MQ=255)                                                                                                                                              tCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGAc                                                                                                  >  2:138114/1‑60 (MQ=255)                                                                                                                                              tCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGAc                                                                                                  <  1:138114/60‑1 (MQ=255)                                                                                                                                              tCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACAt         >  5:8844/1‑149 (MQ=255)                                                                                                                                                cGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAAt                                                                                  <  4:347162/74‑1 (MQ=255)                                                                                                                                                cGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAAt                                                                                  >  3:347162/1‑74 (MQ=255)                                                                                                                                                 gATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGc      <  4:284190/149‑1 (MQ=255)                                                                                                                                                 gATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGc      <  8:51176/149‑1 (MQ=255)                                                                                                                                                     GCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGCCTGt  >  5:29350‑M1/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                       TATAAGCACAAAATATACCCCAAACAGGACGGTTCGTTTAAATTTGAAGGGGACCCCTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGCCTGT  >  NC_002947/2117597‑2117893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.