| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2117745 = | 43 (0.780) | 4 (0.080) | 4/246 | NT | 8.5% | coding (1421/2466 nt) | PP_1884 | hypothetical protein |
| ? | NC_002947 | 2117773 = | 45 (0.850) | coding (1449/2466 nt) | PP_1884 | hypothetical protein | |||||
GTTCGTTTAAATTTGAAGGGGACCCCTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGCCTGTTTTGGCGGCGTCGCTCCACAGCTGACCA > NC_002947/2117628‑2117921 | gcaatgtcgcggggcatgtgccgctcgcctgcgagtatcgcgccaccaaagttcagtttgatggtcttatcgatcaattcctccatgtacaggtctaaacgaaggtccttggcgagtGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTc < 6:97973‑M1/32‑1 (MQ=255) ttAAATTTGAAGGGGACCCCTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAg > 1:352953/1‑149 (MQ=255) aTTTGAAGGGGACCCCTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGAc < 6:253262/148‑1 (MQ=255) gcatgtgccgctcgcctgcgagtatcgcgccaccaaagttcagtttgatggtcttatcgatcaattcctccatgtacaggtctaaacgaaggtccttggcgagtgcggcccccttgccgcagcaagagccgcACTCGCCAAGGACCTTc < 5:97973‑M2/17‑1 (MQ=255) aGGGGACCCCTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGtt < 5:130344/149‑1 (MQ=255) cgctcgcctgcgagtatcgcgccaccaaagttcagtttgatggtcttatcgatcaattcctccatgtacaggtctaaacgaaggtccttggcgagtgcggcccccttgccgcagcaagagccgcACTCGCCAAGGa < 1:146327‑M2/12‑1 (MQ=255) cgctcgcctgcgagtatcgcgccaccaaagttcagtttgatggtcttatcgatcaattcctccatgtacaggtctaaacgaaggtccttggcgagtgcggcccccttgccgcagcaagagccgcACTCGCCAAGGa > 2:146327‑M2/125‑136 (MQ=255) cccTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAgg > 2:58091/1‑133 (MQ=255) cccTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAgg < 1:58091/133‑1 (MQ=255) cccTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCtt < 3:201572/138‑1 (MQ=255) cccTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCtt > 4:201572/1‑138 (MQ=255) gatcagatcaGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATgga < 6:61230/149‑1 (MQ=255) gatcagCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAAt < 4:208705/149‑1 (MQ=255) tcagCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGATGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAAtt > 6:29350/1‑148 (MQ=255) gcgcGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATc > 3:284190/1‑149 (MQ=255) aGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATc < 6:175733/141‑1 (MQ=255) aGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATc > 5:175733/1‑141 (MQ=255) aGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGAc > 7:51176/1‑149 (MQ=255) cTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCAt > 2:244242/1‑149 (MQ=255) ttttCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCCCTCGCCAAGGACCTTCGTGTAGCCCTGTACATGGAGGAATTGATCGATATGCCCATc > 6:47188/1‑148 (MQ=255) ttttCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATc > 2:59150/1‑148 (MQ=255) tCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAAc > 4:205509/1‑149 (MQ=255) aCTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACt > 1:31072/1‑149 (MQ=255) aatctgggAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACtt < 1:207646/144‑1 (MQ=255) ggggAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTtgg < 6:91892/148‑1 (MQ=255) ggggAGTTGCAGCGCCGAATGTTTCAATTGTCGCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTtgg < 2:235774/148‑1 (MQ=255) ggAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACAGAAcct > 2:207646/1‑141 (MQ=255) tgTTGCAGAGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGTCCCCCTTGCCGAAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGgcg < 7:283003/148‑1 (MQ=255) gTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGgcgc > 3:159637/1‑149 (MQ=255) ttGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGgcgc > 5:113137/1‑148 (MQ=255) ttGCAGAGCCGAATGTTTCATTTGTCTCGCTTAGCTCCGATCGCGGCACCCTTGCCGCAGCAAGAG‑‑CCGCAATCGCCAAGGACCTTCGTGTAGACCTGTACATGGAGGAATTGATCGAATATCCCATAAAACTGAACTTtgtgggag > 8:283003/1‑141 (MQ=255) aGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATa < 7:137136/148‑1 (MQ=255) gcgcCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATaa < 6:304705/116‑1 (MQ=255) gcgcCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATaa > 5:304705/1‑116 (MQ=255) tttCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAg > 4:75004/1‑149 (MQ=255) aTTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCgg > 5:133076/1‑148 (MQ=255) tctcGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAAGTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATg > 3:22602/1‑149 (MQ=255) tctcGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATg > 1:166971/1‑149 (MQ=255) gaaggtccttggcgagtGCGGCTC‑‑TTGCTGCGGCAAGGGGGCCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGc < 5:97973‑M1/132‑1 (MQ=255) tcGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGcc > 4:256856/1‑149 (MQ=255) tccttggcgagtGCGGCTC‑‑TTGCTGCGGCAAGGGGGCCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCg < 1:146327‑M1/124‑1 (MQ=255) tccttggcgagtGCGGCTC‑‑TTGCTGCGGCAAGGGGGCCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCg > 2:146327‑M1/13‑136 (MQ=255) tCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGAc < 1:138114/60‑1 (MQ=255) tCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGAc > 2:138114/1‑60 (MQ=255) tCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACAt > 5:8844/1‑149 (MQ=255) cGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAAt < 4:347162/74‑1 (MQ=255) cGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAAt > 3:347162/1‑74 (MQ=255) gATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGc < 8:51176/149‑1 (MQ=255) gATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGc < 4:284190/149‑1 (MQ=255) gagtgcggctcttgctgcggcaagggggccgcACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGc < 6:97973‑M2/117‑1 (MQ=255) GCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGCCTGt > 5:29350‑M1/1‑149 (MQ=255) CGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGCCTGtt < 5:163492‑M1/149‑1 (MQ=255) gCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGCCTGTTTTGGCGGCGt > 3:160159/1‑149 (MQ=255) ccGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGCCTGTTTTGGCGGCGt < 3:256856/148‑1 (MQ=255) gcaAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGCCTGTTTTGGCGGCGTCGCTc > 3:325090/1‑148 (MQ=255) aaGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGCCTGTTTTGGCGGCGTCGCTCcac < 6:113137/149‑1 (MQ=255) ccgcACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGCCTGTTTTGGCGGCGTCGCTCCACAGCt > 4:162188‑M2/5‑148 (MQ=255) gcACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGCCTGTTTTGGCGGCGTCGCTCCACAGCTGAc < 3:75004‑M2/147‑1 (MQ=255) cACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGCCTGTTTTGGCGGCGTCGCTCCACAGCTGAcc < 4:159637‑M2/148‑1 (MQ=255) cACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGCCTGTTTTGGCGGCGTCGCTCCACAGCTGAcc < 4:325090‑M2/148‑1 (MQ=255) aCTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGCCTGTTTTGGCGGCGTCGCTCCACAGCTGACCa > 6:232186/1‑149 (MQ=255) | GTTCGTTTAAATTTGAAGGGGACCCCTACGAAGATCAGATCAGCGCGTTGAGCCTTTTTCATGTACTTTGGGGAGTTGCAGCGCCGAATGTTTCATTTGTCTCGCTGAGCTCCGATCGCGGCCCCCTTGCCGCAGCAAGAG‑‑CCGCACTCGCCAAGGACCTTCGTTTAGACCTGTACATGGAGGAATTGATCGATAAGACCATCAAACTGAACTTTGGTGGCGCGATACTCGCAGGCGAGCGGCACATGCCCCGCGACATTGCCTGTTTTGGCGGCGTCGCTCCACAGCTGACCA > NC_002947/2117628‑2117921 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |