New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2774442 =	46 (0.830)	3 (0.060)	3/246	NT	6.6%	coding (1070/1353 nt)	PP_5521	hypothetical protein
	?	NC_002947	2774487 =	41 (0.770)					coding (1025/1353 nt)	PP_5521	hypothetical protein

CAGCGTTTGCCCGTCGGCGCTGATATCCATCGCACTGATGGTCGAGCCCAGGTAATGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGACGATCAACTGGTCAC  >  NC_002947/2774300‑2774589                                                                                                                                               |                                                                                                                                                    caGCGTTTGCCCGTCGGCGCTGATATCCATCGCACTGATGGTCGAGCCCAGGTAATGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCa                                                                                                                                                >  5:335298/1‑148 (MQ=255)     gTTTGCCCGTCGGCGCTGATATCCATCGCACTGATGGTCGAGCCCAGGTAATGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATacac                                                                                                                                           >  2:39044/1‑149 (MQ=255)           ccGTCGGCGCTGATATCCATCGCACTGATGGTCGAGCCCAGGTAATGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTgc                                                                                                                                     >  1:328296/1‑149 (MQ=255)           ccGTCGGCGCTGATATCCATCGCACTGATGGTCGAGCCCAGGTAATGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTgc                                                                                                                                     <  6:271638/149‑1 (MQ=255)                     tGATATCCATCGCACTGATGGTCGAGCCCAGGTAATGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTg                                                                                                                            >  8:26501/1‑148 (MQ=255)                       atatCCATCGCACTGATGGTCGAGCCCAGGTAATGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCAc                                                                                                                         <  2:328296/149‑1 (MQ=255)                                 cACTGATGGTCGAGCCCAGGTAATGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTa                                                                                                               >  5:347905/1‑149 (MQ=255)                                   cTGATGGGCGCGCCCTGGTAATGCTGCCAATGCTCCTTACCCTCTTCGCCAACCGCCCGCTGGTAGCAATAGGCATCACCCACATTGTCCTCCCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCTGGGGGGTAcg                                                                                                             <  6:347905/149‑1 (MQ=255)                                        ggTCGAGCCCAGGTAATGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGt                                                                                                        >  3:276555/1‑149 (MQ=255)                                             cagttgatcgtcaatgcctgccatttctacagcggtgccacgctggccgtgagggtggcagacctgcacgggctggataccgattactacagccaggaCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTgg                                                                                                   >  6:306026‑M1/99‑149 (MQ=255)                                             aGCCCAGGTAATGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCTCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTgg                                                                                                   <  4:276555/149‑1 (MQ=255)                                             aGCCCAGGTAATGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTgg                                                                                                   <  1:39044/149‑1 (MQ=255)                                              gCCCAGGTAATGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCggg                                                                                                                  <  2:278260/133‑1 (MQ=255)                                              gCCCAGGTAATGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGACATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCggg                                                                                                                  >  1:278260/1‑133 (MQ=255)                                                      aaTGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCTCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTaa                                                                                          >  7:157419/1‑149 (MQ=255)                                                          ctgcCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCAGCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCg                                                                                       <  6:335298/148‑1 (MQ=255)                                                           tgcCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCg                                                                                                                    >  7:244772/1‑118 (MQ=255)                                                           tgcCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCg                                                                                                                    <  8:244772/118‑1 (MQ=255)                                                             ccAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATc                                                                                                                               <  8:16786/105‑1 (MQ=255)                                                             ccAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATc                                                                                                                               >  7:16786/1‑105 (MQ=255)                                                               aaTGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATcc                                                                                 <  4:271294/149‑1 (MQ=255)                                                                aTGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCa                                                                                <  7:18430/149‑1 (MQ=255)                                                                         acagcggtgccacgctggccgtgagggtggcagacctgcacgggctggataccgattactacagccaggaCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGt                                                                                                        <  3:240648‑M1/46‑1 (MQ=255)                                                                         acagcggtgccacgctggccgtgagggtggcagacctgcacgggctggataccgattactacagccaggaCCCGCATACACCCTTGCGCCATCCTCCACCAGCGGGGTACGCGGGt                                                                                                        >  4:240648‑M1/71‑116 (MQ=255)                                                                             tctTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCg                                                                                       <  7:282047/129‑1 (MQ=255)                                                                             tctTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCg                                                                                       >  8:282047/1‑129 (MQ=255)                                                                                     aaaCGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCAccc                                                           >  5:297378/1‑149 (MQ=255)                                                                                           ccGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACgg                                                     >  4:113616/1‑149 (MQ=255)                                                                                                 gTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTa                                                                                    >  5:367147/1‑112 (MQ=255)                                                                                                 gTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTa                                                                                    <  6:367147/112‑1 (MQ=255)                                                                                                     ccATCGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACGCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCGTGGCTGTAGTAATCGGTATCCAGCGCGTGCAGGTCTGCCAACCTGACGGCCAGCGTGGc                                           >  8:291798/1‑149 (MQ=255)                                                                                                        tAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAAAAAACAGTATACACCCCATTCAAGTAATCCACCCGACCGGCCCGCCTTGCAcc                                        >  1:115109/1‑149 (MQ=255)                                                                                                            cATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTgc                                                                                                                                     <  5:98065/52‑1 (MQ=255)                                                                                                            cATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTgc                                                                                                                                     >  6:98065/1‑52 (MQ=255)                                                                                                              tCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTg                                    >  7:295981/1‑147 (MQ=255)                                                                                                                 cccACAATGTACTCGCCATCGCGCGCTACCCCCTCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGaa                               <  8:157419/149‑1 (MQ=255)                                                                                                                 cccACAATGTACTCGCCATCGCGCGCTACCACCGCATACAACCTTGCGCCATCCTCCACCAGCGCGGTACGCGGGTCCTGGCTGAAGTAATCGGt                                                                                     >  6:220531/1‑95 (MQ=255)                                                                                                                 cccACAATCTACTCGCCATCGCGCGCTACCCCCTGATACACCCTTGCGCCATCCTGCACCAGCGGGTTACGCGGGTCCTGGCTGTAGTAATCGGt                                                                                     <  5:220531/95‑1 (MQ=255)                                                                                                                   cacaATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGt                                                                    <  4:129149/110‑1 (MQ=255)                                                                                                                   cacaATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGt                                                                    >  3:129149/1‑110 (MQ=255)                                                                                                                      aaTGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATggc                          <  6:297378/149‑1 (MQ=255)                                                                                                                       aTGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATggca                         <  3:113616/149‑1 (MQ=255)                                                                                                                          tACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTAACCAGCCCGAGCAGGTCTGCCACCCTCACGGCCCGCCTGCCACCGCTGTAGAACTggcagg                       >  8:283975/1‑148 (MQ=255)                                                                                                                             tCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTgta                                                                                              <  7:296255/74‑1 (MQ=255)                                                                                                                             tCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCAAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCAtt                   >  7:187232/1‑149 (MQ=255)                                                                                                                             tCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCAGGCTgta                                                                                              >  8:296255/1‑74 (MQ=255)                                                                                                                               gCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGa                 >  5:112321/1‑149 (MQ=255)                                                                                                                               gCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGa                 >  8:297125/1‑149 (MQ=255)                                                                                                                                      cgcgcTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGACGATCaa          >  5:321894/1‑149 (MQ=255)                                                                                                                                             cccccGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGt                                                                    <  1:112307/84‑1 (MQ=255)                                                                                                                                             cccccGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGt                                                                    >  2:112307/1‑84 (MQ=255)                                                                                                                                              ccccGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGACGATCAACTGGTCAc  <  7:26501/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                    CAGCGTTTGCCCGTCGGCGCTGATATCCATCGCACTGATGGTCGAGCCCAGGTAATGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGACGATCAACTGGTCAC  >  NC_002947/2774300‑2774589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.