New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2774442 =	46 (0.830)	3 (0.060)	3/246	NT	6.6%	coding (1070/1353 nt)	PP_5521	hypothetical protein
	?	NC_002947	2774487 =	41 (0.770)					coding (1025/1353 nt)	PP_5521	hypothetical protein

GGTCGAGCCCAGGTAATGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGACGATCAACTGGTCACCGGCGCGGTTGAACAAGGCAAAGTGTGG  >  NC_002947/2774339‑2774617                                                                                                                                                     |                                                                                                                                   ggTCGAGCCCAGGTAATGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGt                                                                                                                                    >  3:276555/1‑149 (MQ=255)      cagttgatcgtcaatgcctgccatttctacagcggtgccacgctggccgtgagggtggcagacctgcacgggctggataccgattactacagccaggaCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTgg                                                                                                                               >  6:306026‑M1/99‑149 (MQ=255)      aGCCCAGGTAATGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCTCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTgg                                                                                                                               <  4:276555/149‑1 (MQ=255)      aGCCCAGGTAATGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTgg                                                                                                                               <  1:39044/149‑1 (MQ=255)               aaTGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCTCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTaa                                                                                                                      >  7:157419/1‑149 (MQ=255)                   ctgcCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCAGCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCg                                                                                                                   <  6:335298/148‑1 (MQ=255)                        aaTGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATcc                                                                                                             <  4:271294/149‑1 (MQ=255)                         aTGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCa                                                                                                            <  7:18430/149‑1 (MQ=255)                                  acagcggtgccacgctggccgtgagggtggcagacctgcacgggctggataccgattactacagccaggaCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGt                                                                                                                                    <  3:240648‑M1/46‑1 (MQ=255)                                  acagcggtgccacgctggccgtgagggtggcagacctgcacgggctggataccgattactacagccaggaCCCGCATACACCCTTGCGCCATCCTCCACCAGCGGGGTACGCGGGt                                                                                                                                    >  4:240648‑M1/71‑116 (MQ=255)                                      tctTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCg                                                                                                                   >  8:282047/1‑129 (MQ=255)                                      tctTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCg                                                                                                                   <  7:282047/129‑1 (MQ=255)                                              aaaCGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCAccc                                                                                       >  5:297378/1‑149 (MQ=255)                                                    ccGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACgg                                                                                 >  4:113616/1‑149 (MQ=255)                                                          gTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTa                                                                                                                <  6:367147/112‑1 (MQ=255)                                                          gTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTa                                                                                                                >  5:367147/1‑112 (MQ=255)                                                              ccATCGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACGCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCGTGGCTGTAGTAATCGGTATCCAGCGCGTGCAGGTCTGCCAACCTGACGGCCAGCGTGGc                                                                       >  8:291798/1‑149 (MQ=255)                                                                 tAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAAAAAACAGTATACACCCCATTCAAGTAATCCACCCGACCGGCCCGCCTTGCAcc                                                                    >  1:115109/1‑149 (MQ=255)                                                                       tCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTg                                                                >  7:295981/1‑147 (MQ=255)                                                                          cccACAATGTACTCGCCATCGCGCGCTACCCCCTCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGaa                                                           <  8:157419/149‑1 (MQ=255)                                                                          cccACAATGTACTCGCCATCGCGCGCTACCACCGCATACAACCTTGCGCCATCCTCCACCAGCGCGGTACGCGGGTCCTGGCTGAAGTAATCGGt                                                                                                                 >  6:220531/1‑95 (MQ=255)                                                                          cccACAATCTACTCGCCATCGCGCGCTACCCCCTGATACACCCTTGCGCCATCCTGCACCAGCGGGTTACGCGGGTCCTGGCTGTAGTAATCGGt                                                                                                                 <  5:220531/95‑1 (MQ=255)                                                                            cacaATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGt                                                                                                >  3:129149/1‑110 (MQ=255)                                                                            cacaATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGt                                                                                                <  4:129149/110‑1 (MQ=255)                                                                               aaTGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATggc                                                      <  6:297378/149‑1 (MQ=255)                                                                                aTGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATggca                                                     <  3:113616/149‑1 (MQ=255)                                                                                   tACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTAACCAGCCCGAGCAGGTCTGCCACCCTCACGGCCCGCCTGCCACCGCTGTAGAACTggcagg                                                   >  8:283975/1‑148 (MQ=255)                                                                                      tCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTgta                                                                                                                          <  7:296255/74‑1 (MQ=255)                                                                                      tCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCAAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCAtt                                               >  7:187232/1‑149 (MQ=255)                                                                                      tCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCAGGCTgta                                                                                                                          >  8:296255/1‑74 (MQ=255)                                                                                        gCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGa                                             >  5:112321/1‑149 (MQ=255)                                                                                        gCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGa                                             >  8:297125/1‑149 (MQ=255)                                                                                               cgcgcTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGACGATCaa                                      >  5:321894/1‑149 (MQ=255)                                                                                                  ccaggacccgcgtaccccgctggtgcaggatggcgcaagggtgtatgcgggTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGACGATCAACTg                                   >  6:306026‑M2/52‑149 (MQ=255)                                                                                                      cccccGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGt                                                                                                >  2:112307/1‑84 (MQ=255)                                                                                                      cccccGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGt                                                                                                <  1:112307/84‑1 (MQ=255)                                                                                                       ccccGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGACGATCAACTGGTCAc                              <  7:26501/149‑1 (MQ=255)                                                                                                       acccgcgtaccccgctggtggaggatggcgcaagggtgtatgcgggTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGt                                                               >  4:240648‑M2/47‑116 (MQ=255)                                                                                                       acccgcgtaccccgctggtgcaggatggcgcaagggtgtatgcgggTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGt                                                               <  3:240648‑M2/70‑1 (MQ=255)                                                                                                            CATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGACGATCAACTGGTCACCGgcg                         <  5:86811‑M1/149‑1 (MQ=255)                                                                                                            CATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCAAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGACGATCAACTGGTCACCGgcg                         >  8:187232‑M1/1‑149 (MQ=255)                                                                                                             aTACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGACGATCAACTGGTCACCGgcgc                        <  6:86811/149‑1 (MQ=255)                                                                                                                cacCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGACGATCAACTGGTCACCGGCGCGGt                     >  6:339057/1‑149 (MQ=255)                                                                                                                   ccTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGGCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGACGATCAACTGGTCACCGGCGCGGTTg                   >  7:316498/1‑148 (MQ=255)                                                                                                                        cgcCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGACGATCAACTGGTCACCGGCGCGGTTGAACaa              <  2:115109/148‑1 (MQ=255)                                                                                                                        cgcCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGACGATCAACTGGTCACCGGCGCGGTTGAACAAg             <  6:112321/149‑1 (MQ=255)                                                                                                                             tCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACTGCTGTAGAAATGGCAGGCATTGACGATCAACTGGTCACCGGCGCGGTTGAACAAGGCa          >  2:67653/1‑147 (MQ=255)                                                                                                                               cTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGACGATCAACTGGTCACCGGCGCGGTTGAACAAGGCAAAgt      >  2:163242/1‑149 (MQ=255)                                                                                                                                  cACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGACGATCAACTGGTCACCGGCGCGGTTGAACAAGGCAAAGtgtg   <  7:297125/149‑1 (MQ=255)                                                                                                                                   aCCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGGCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGACGATCAACTGGTCACCGGCGCGGTTGAACAAGGCAAAGTGTgg  <  8:316498/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                   GGTCGAGCCCAGGTAATGCTGCCAATGCTCCGTACCCTCTTCGCCAAACGCCCGCAGGTAGCCATAGGCATCACCCACAATGTACTCGCCATCGCGCGCTACCCCCGCATACACCCTTGCGCCATCCTGCACCAGCGGGGTACGCGGGTCCTGGCTGTAGTAATCGGTATCCAGCCCGTGCAGGTCTGCCACCCTCACGGCCAGCGTGGCACCGCTGTAGAAATGGCAGGCATTGACGATCAACTGGTCACCGGCGCGGTTGAACAAGGCAAAGTGTGG  >  NC_002947/2774339‑2774617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.