New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3050490	37 (0.670)	4 (0.080)	4/246	NT	9.9%	coding (322/1164 nt)	PP_2663	hypothetical protein
	?	NC_002947	= 3050517	37 (0.700)					coding (349/1164 nt)	PP_2663	hypothetical protein

CTTTGGCGGCATACGCCTGGTCGGCTGCACCAGCGCCGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCGCAGC  >  NC_002947/3050342‑3050638                                                                                                                                                      |                                                                                                                                                     cTTTGGCGGCATACGCCTGGTCGGCTGCACCAGCGCCGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCC                                                                                                                                                      >  4:64488‑M1/1‑149 (MQ=255)         gcATACGCCTGGTCGGCTGCACCAGCGCCGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGAc                                                                                                                                              <  6:8130/149‑1 (MQ=255)           aTACGCCTGGTCGGCTGCACCAGCGCCGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGAcgc                                                                                                                                            >  8:28678/1‑149 (MQ=255)                    gTCGGCTGCACCAGCGCCGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGAt                                                                                                                                   <  7:28678/149‑1 (MQ=255)                     tCGGCTGCACCAGCGCCGGTGAAATCACCCCGCTGGGCTACGGCCGCAAATGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGATCCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGAt                                                                                                                                   <  1:97888/149‑1 (MQ=255)                        gCTGCACCAGCGCCGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTc                                                                                                                               >  8:195747/1‑149 (MQ=255)                            cACCAGCGCCGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCgctcgaccatctgctgcgcgtcgat                                                                                                                             >  5:33869‑M1/1‑122 (MQ=255)                            cACCAGCGCCGGTGAAATCACCCCACTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGc                                                                                                                           <  5:106252/149‑1 (MQ=255)                             aCCAGCGCCGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCg                                                                                                                          <  2:111187‑M2/149‑2 (MQ=255)                               cAGCGCCGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCggc                                                                                                                        <  8:115361‑M2/149‑4 (MQ=255)                                   gcCGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGt                                                                                                                    <  6:217907/149‑1 (MQ=255)                                    ccGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCgctcgaccatctgctgcgcgtcgatcaggttgaag                                                                                                                   <  6:33869‑M1/149‑36 (MQ=255)                                      ggTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCgctcgaccatctgctgcgcgtcgatcagg                                                                                                                         >  1:151575‑M1/1‑112 (MQ=255)                                      ggTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCgctcgaccatctgctgcgcgtcgatcagg                                                                                                                         <  2:151575‑M1/141‑30 (MQ=255)                                         gAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCAc                                                                                                              >  8:246801/1‑149 (MQ=255)                                               aCCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCg                                                                                                        <  7:115361/149‑1 (MQ=255)                                                   cGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCgcagc                                                                                                    <  1:196885/149‑1 (MQ=255)                                                   cGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCgcag                                                                                                     >  7:178891/1‑148 (MQ=255)                                                   cGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAACAGATGGTCGAGCGGCTGGTCGGCACCTGCCgcagc                                                                                                    <  8:204387/149‑1 (MQ=255)                                                        ggCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAAt                                                                                                 <  3:64488/147‑1 (MQ=255)                                                          cTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCgcagc                                                                                                    >  1:173661/1‑142 (MQ=255)                                                          cTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCgcagc                                                                                                    <  2:173661/142‑1 (MQ=255)                                                             cGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTg                                                                                           <  7:298755/148‑1 (MQ=255)                                                                        gCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATg                                                                                                                                  <  4:228970/98‑1 (MQ=255)                                                                        gCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATg                                                                                                                                  >  3:228970/1‑98 (MQ=255)                                                                              cggcggTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCcac                                                                         <  8:178891/149‑1 (MQ=255)                                                                                       gCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCa                                                                <  7:246801/149‑1 (MQ=255)                                                                                        cTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGc                                                                            <  7:255974/136‑1 (MQ=255)                                                                                        cTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGc                                                                            >  8:255974/1‑136 (MQ=255)                                                                                        cTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGGTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCAccggga                                                                                                         >  6:27675/1‑103 (MQ=255)                                                                                             aTCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCggc                                                                                                                        >  3:264625‑M2/1‑84 (MQ=255)                                                                                             aTCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCggc                                                                                                                        <  4:264625‑M2/87‑4 (MQ=255)                                                                                                aCCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCa                                                            >  6:11919/1‑144 (MQ=255)                                                                                                aCCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCa                                                            <  5:11919/144‑1 (MQ=255)                                                                                                     cACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAg                                                                               >  6:285857/1‑120 (MQ=255)                                                                                                     cACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAg                                                                               <  5:285857/120‑1 (MQ=255)                                                                                                              aT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTc                                         >  4:18937/1‑149 (MQ=255)                                                                                                                        gcgTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCga                                <  3:171988/149‑1 (MQ=255)                                                                                                                              aTCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGAt                          >  7:42983/1‑149 (MQ=255)                                                                                                                                 gATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATg                         <  7:237963/147‑1 (MQ=255)                                                                                                                                 gATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATg                         >  8:237963/1‑147 (MQ=255)                                                                                                                                  aTGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGgc                                                                                         >  2:174547/1‑82 (MQ=255)                                                                                                                                   tGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAgg                                                                              <  3:194178/92‑1 (MQ=255)                                                                                                                                   tGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAgg                                                                              >  4:194178/1‑92 (MQ=255)                                                                                                                                        tGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGcc                >  8:275041/1‑149 (MQ=255)                                                                                                                                               cTTCAACCTGATCGACGCGCAGCAGATGGTCGAGCggctgaagcgctccatttcatcgatcaacgcggtggcgatcgaaaagtgccggtgatcgaagccgaccgccgtcacgcaattgcggccgtagcccagcggggtgatttcaccgg         <  6:33869‑M2/149‑115 (MQ=255)                                                                                                                                                ttCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAg        >  7:325382/1‑149 (MQ=255)                                                                                                                                                  cAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAgcg      >  1:188408/1‑149 (MQ=255)                                                                                                                                                    gCCgctcgaccatctgctgcgcgtcgatcaggctgaagcgctccatttcatcgatcaacgcggtggcgatcgaaaagtgccggtgatcgaagccgaccgccgtcacgcaattgcggccgtagcccagcggggtgatttcaccggcgctg    <  8:115361‑M1/149‑147 (MQ=255)                                                                                                                                                    gCCgctcgaccatctgctgcgcgtcgatcaggctgaagcgctccatttcatcgatcaacgcggtggcgatcgaaaagtgccggtgat                                                                  <  4:264625‑M1/87‑85 (MQ=255)                                                                                                                                                    gCCgctcgaccatctgctgcgcgtcgatcaggctgaagcgctccatttcatcgatcaacgcggtggcgatcgaaaagtgccggtgat                                                                  >  3:264625‑M1/1‑3 (MQ=255)                                                                                                                                                     ccTGATCGACGCGCAGCAGATGGTCGAGCggctgaagcgctccatttcatcgatcaacgcggtggcgatcgaaaagtgccggtgatcgaagccgaccgccgtcacgcaattgcggccgtagcccagcggggtgatttcacc           >  1:151575‑M2/1‑29 (MQ=255)                                                                                                                                                     ccTGATCGACGCGCAGCAGATGGTCGAGCggctgaagcgctccatttcatcgatcaacgcggtggcgatcgaaaagtgccggtgatcgaagccgaccgccgtcacgcaattgcggccgtagcccagcggggtgatttcacc           <  2:151575‑M2/141‑113 (MQ=255)                                                                                                                                                     ccTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCgcag   >  5:293255/1‑149 (MQ=255)                                                                                                                                                      cgctcgaccatctgctgcgcgtcgatcaggctgaagcgctccatttcatcgatcaacgcggtggcgatcgaaaagtgccggtgatcgaagccgaccgccgtcacgcaattgcggccgtagcccagcggggtgatttcaccggcgctggt  <  2:111187‑M1/149‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CTTTGGCGGCATACGCCTGGTCGGCTGCACCAGCGCCGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGAT‑CGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCGCAGC  >  NC_002947/3050342‑3050638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.