New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3050490	37 (0.670)	4 (0.080)	4/246	NT	9.9%	coding (322/1164 nt)	PP_2663	hypothetical protein
	?	NC_002947	= 3050517	37 (0.700)					coding (349/1164 nt)	PP_2663	hypothetical protein

CACCAGCGCCGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCGCAGCACTGGGGGATATCCCGCACTTCGG  >  NC_002947/3050369‑3050662                                                                                                                                                     |                                                                                                                                                  cACCAGCGCCGGTGAAATCACCCCACTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGc                                                                                                                                                   <  5:106252/149‑1 (MQ=255)  aCCAGCGCCGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCg                                                                                                                                                  <  2:111187‑M2/149‑2 (MQ=255)    cAGCGCCGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCggc                                                                                                                                                <  8:115361‑M2/149‑4 (MQ=255)        gcCGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGt                                                                                                                                            <  6:217907/149‑1 (MQ=255)              gAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCAc                                                                                                                                      >  8:246801/1‑149 (MQ=255)                    aCCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCg                                                                                                                                <  7:115361/149‑1 (MQ=255)                        cGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCgcagc                                                                                                                            <  1:196885/149‑1 (MQ=255)                        cGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCgcag                                                                                                                             >  7:178891/1‑148 (MQ=255)                        cGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAACAGATGGTCGAGCGGCTGGTCGGCACCTGCCgcagc                                                                                                                            <  8:204387/149‑1 (MQ=255)                             ggCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAAt                                                                                                                         <  3:64488/147‑1 (MQ=255)                               cTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCgcagc                                                                                                                            <  2:173661/142‑1 (MQ=255)                               cTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCgcagc                                                                                                                            >  1:173661/1‑142 (MQ=255)                                  cGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTg                                                                                                                   <  7:298755/148‑1 (MQ=255)                                                   cggcggTCGGCTTCGATCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCcac                                                                                                 <  8:178891/149‑1 (MQ=255)                                                            gCTTCGATCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCa                                                                                        <  7:246801/149‑1 (MQ=255)                                                             cTTCGATCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGc                                                                                                    <  7:255974/136‑1 (MQ=255)                                                             cTTCGATCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGc                                                                                                    >  8:255974/1‑136 (MQ=255)                                                             cTTCGATCACCGGCACTTTTCGATCGCCACCGCGGTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCAccggga                                                                                                                                 >  6:27675/1‑103 (MQ=255)                                                                  aTCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCggc                                                                                                                                                <  4:264625‑M2/87‑4 (MQ=255)                                                                  aTCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCggc                                                                                                                                                >  3:264625‑M2/1‑84 (MQ=255)                                                                     aCCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCa                                                                                    <  5:11919/144‑1 (MQ=255)                                                                     aCCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCa                                                                                    >  6:11919/1‑144 (MQ=255)                                                                          cACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAg                                                                                                       <  5:285857/120‑1 (MQ=255)                                                                          cACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAg                                                                                                       >  6:285857/1‑120 (MQ=255)                                                                                   aTCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTc                                                                 >  4:18937/1‑149 (MQ=255)                                                                                            gcgTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCga                                                        <  3:171988/149‑1 (MQ=255)                                                                                                  aTCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGAt                                                  >  7:42983/1‑149 (MQ=255)                                                                                                     gATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATg                                                 <  7:237963/147‑1 (MQ=255)                                                                                                     gATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATg                                                 >  8:237963/1‑147 (MQ=255)                                                                                                      aTGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGgc                                                                                                                 >  2:174547/1‑82 (MQ=255)                                                                                                       tGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAgg                                                                                                      <  3:194178/92‑1 (MQ=255)                                                                                                       tGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAgg                                                                                                      >  4:194178/1‑92 (MQ=255)                                                                                                            tGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGcc                                        >  8:275041/1‑149 (MQ=255)                                                                                                                   cTTCAACCTGATCGACGCGCAGCAGATGGTCGAGCggctgaagcgctccatttcatcgatcaacgcggtggcgatcgaaaagtgccggtgatcgaagccgaccgccgtcacgcaattgcggccgtagcccagcggggtgatttcaccgg                                 <  6:33869‑M2/149‑115 (MQ=255)                                                                                                                    ttCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAg                                >  7:325382/1‑149 (MQ=255)                                                                                                                      cAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAgcg                              >  1:188408/1‑149 (MQ=255)                                                                                                                         ccTGATCGACGCGCAGCAGATGGTCGAGCggctgaagcgctccatttcatcgatcaacgcggtggcgatcgaaaagtgccggtgatcgaagccgaccgccgtcacgcaattgcggccgtagcccagcggggtgatttcacc                                   >  1:151575‑M2/1‑29 (MQ=255)                                                                                                                         ccTGATCGACGCGCAGCAGATGGTCGAGCggctgaagcgctccatttcatcgatcaacgcggtggcgatcgaaaagtgccggtgatcgaagccgaccgccgtcacgcaattgcggccgtagcccagcggggtgatttcacc                                   <  2:151575‑M2/141‑113 (MQ=255)                                                                                                                         ccTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCgcag                           >  5:293255/1‑149 (MQ=255)                                                                                                                            gATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCGCAGCAc                        >  5:301925/1‑149 (MQ=255)                                                                                                                             aTCGACGCGCAGCAGATGGTCGAGCggctgaagcgctccatttcatcgatcaacgcggtggcgatcgaaaagtgccggtgatcgaagccgaccgccgtcacgcaattgcggccgtagcccagcggggtgatttcaccggcgctggtg                         >  5:33869‑M2/1‑25 (MQ=255)                                                                                                                                  cgcgCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCGCAGCACTggggg                  <  7:275041/149‑1 (MQ=255)                                                                                                                                  cgcgCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCGCAGCACTggggg                  <  1:117814/149‑1 (MQ=255)                                                                                                                                     gcagcaGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCGCAGCACTGGGGGata               <  3:18937/149‑1 (MQ=255)                                                                                                                                       agcagATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCGCAGCACTGGGGGATATc             <  2:188408/149‑1 (MQ=255)                                                                                                                                           gATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGTGCAGCACTGGGGGATATCCCg          >  5:367990/1‑148 (MQ=255)                                                                                                                                               gTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCGCAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCGCAGCACTGGGGGATATCCCGCACtt     >  1:172297/1‑149 (MQ=255)                                                                                                                                                  gAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGTGCAGCACTGGGGGATATCCCGCACTTcgg  <  6:367990/149‑1 (MQ=255)                                                                                                                                                  gAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCGCAGCACTGGGGGATATCCCGCACTTcgg  >  5:199301/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CACCAGCGCCGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCGCAGCACTGGGGGATATCCCGCACTTCGG  >  NC_002947/3050369‑3050662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.