New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3767345	38 (0.690)	3 (0.060)	3/244	NT	7.4%	coding (778/1290 nt)	PP_3329	membrane protein
	?	NC_002947	= 3767379	39 (0.740)					coding (812/1290 nt)	PP_3329	membrane protein

AGACCGGCTATGTACAGCACATCGATGTCCTCACGCTGAGCAAGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTCCAGCGGTAAATGA  >  NC_002947/3767199‑3767490                                                                                                                                                   |                                                                                                                                                   aGACCGGCTATGTACAGCACATCGATGTCCTCACGCTGAGCAAGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCat                                                                                                                                                  <  6:220055‑M1/149‑3 (MQ=255)  gACCGGCTATGTACAGCACATCGATGTCCTCACGCTGAGCAAGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGc                                                                                                                                                 >  4:279074/1‑149 (MQ=255)      ggCTATGTACAGCACATCGATGTCCTCACGCTGAGCAAGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGa                                                                                                                                             <  1:142459/149‑1 (MQ=255)      ggCTATGTACAGCACATCGATGTCCTCACGCTGAGCAAGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGa                                                                                                                                             <  2:37699/149‑1 (MQ=255)           tGTACAGCACATCGATGTCCTCACGCTGAGCAAGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCt                                                                                                                                                <  2:307500/141‑1 (MQ=255)           tGTACAGCACATCGATGTCCTCACGCTGAGCAAGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCt                                                                                                                                                >  1:307500/1‑141 (MQ=255)             tACAGCACATCGATGTCCTCACGCTGAGCAAGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACt                                                                                                                                      <  5:357583/149‑1 (MQ=255)                 gCACATCGATGTCCTCACGCTGAGCAAGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGgcg                                                                                                                                  >  3:30483/1‑149 (MQ=255)                    caTCGATGTCCTCACGCTGAGCAAGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTg                                                                                                                                     >  1:284487/1‑143 (MQ=255)                    caTCGATGTCCTCACGCTGAGCAAGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTg                                                                                                                                     <  2:284487/143‑1 (MQ=255)                      tCGATGTCCTCACGCTGAGCAAGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTg                                                                                                                             <  2:121390/149‑1 (MQ=255)                            tCCTCACGCTGAGCAAGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATc                                                                                                                       <  4:83154/149‑1 (MQ=255)                              cTCACGCTGAGCAAGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGaca                                                                                                                                        >  2:259691/1‑130 (MQ=255)                              cTCACGCTGAGCAAGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATc                                                                                                                       >  1:313663/1‑147 (MQ=255)                              cTCACGCTGAGCAAGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATc                                                                                                                       <  2:313663/147‑1 (MQ=255)                                       aGCAAGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCatctcgatgtccagcgcgccagtgtcatcgagcggctcgc                                                                                                            <  6:296609‑M1/149‑41 (MQ=255)                                          aaGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCatctcgatgtccagcgcgccagtgtcatcgagcggctcgcca                                                                                                          <  8:155673‑M1/148‑43 (MQ=255)                                          aaGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCatctcgatgtccagcgcgccagtgtcatcgagcggctcgcca                                                                                                          >  7:155673‑M1/1‑106 (MQ=255)                                             aTTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGt                                                                                                      <  3:279074/149‑1 (MQ=255)                                                     gcgcACCGAGATTCGAATTTTCCTCGAAGTTCGGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCg                                                                                              <  2:313308/149‑1 (MQ=255)                                                           cGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCa                                                                                        <  7:106121/149‑1 (MQ=255)                                                            gagaTTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAg                                                                                       <  5:135120/149‑1 (MQ=255)                                                                       tttCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCg                                                                           >  3:320587/1‑149 (MQ=255)                                                                        ttCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCg                                                                           <  4:30483/148‑1 (MQ=255)                                                                                aGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCGAGCATGAcc                                                                  >  6:324643/1‑149 (MQ=255)                                                                                         tGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCg                                                         >  2:276922/1‑149 (MQ=255)                                                                                               cTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGt                                                                               >  8:44909/1‑122 (MQ=255)                                                                                               cTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGt                                                                               <  7:44909/122‑1 (MQ=255)                                                                                                         gAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCATGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGtgttgt                                          >  3:122121/1‑148 (MQ=255)                                                                                                           gggTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCag                                       <  5:324643/149‑1 (MQ=255)                                                                                                                 ggtggtggCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGa                                                                                                    <  1:134474/83‑1 (MQ=255)                                                                                                                 ggtggtggCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGa                                                                                                    >  2:134474/1‑83 (MQ=255)                                                                                                                  gtggtggCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATc                                  <  2:163817/147‑1 (MQ=255)                                                                                                                  gtggtggCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATc                                  >  1:163817/1‑147 (MQ=255)                                                                                                                   tggtggCACGGGCCTTGGCCGTGAATGGCGAGCCGCTTGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCTcc                               >  4:195197/1‑149 (MQ=255)                                                                                                                   tggtggCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGTATCGAGCATGACCCGCGCTTCGGGCTTTCg                                                 <  1:209171/132‑1 (MQ=255)                                                                                                                   tggtggCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCtttag                                                 >  2:209171/1‑129 (MQ=255)                                                                                                                     gtggCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTc                             >  2:106414/1‑149 (MQ=255)                                                                                                                                cTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCtt                   >  3:208430/1‑148 (MQ=255)                                                                                                                                    gCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTtctc               <  2:53540/148‑1 (MQ=255)                                                                                                                                    gCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTtctc               <  4:173932/148‑1 (MQ=255)                                                                                                                                    gCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTcc              >  1:167260/1‑149 (MQ=255)                                                                                                                                     ccGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTtctc               >  2:187395/1‑147 (MQ=255)                                                                                                                                          aaTGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTCCAGCgg         <  4:320587/148‑1 (MQ=255)                                                                                                                                          aaTGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTCCAGCGGt        <  2:167260/149‑1 (MQ=255)                                                                                                                                            tGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATgctcgccattcacggccaaggcccgtgccaccaccataccctcatgtacaaaggtgccaggcagaacttcgaggaaaattcgaatctcggtgcgcgttgcaatctt        >  7:155673‑M2/1‑42 (MQ=255)                                                                                                                                            tGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATgctcgccattcacggccaaggcccgtgccaccaccataccctcatgtacaaaggtgccaggcagaacttcgaggaaaattcgaatctcggtgcgcgttgcaatctt        <  8:155673‑M2/148‑107 (MQ=255)                                                                                                                                              gCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATgctcgccattcacggccaaggcccgtgccaccaccataccctcatgtacaaaggtgccaggcagaacttcgaggaaaattcgaatctcggtgcgcgttgcaatcttgct     <  6:296609‑M2/149‑110 (MQ=255)                                                                                                                                                gAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTCCAGCGGTAAATGa  >  7:90762/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                   AGACCGGCTATGTACAGCACATCGATGTCCTCACGCTGAGCAAGATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGTCGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTCCAGCGGTAAATGA  >  NC_002947/3767199‑3767490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.