New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3767345	38 (0.690)	3 (0.060)	3/244	NT	7.4%	coding (778/1290 nt)	PP_3329	membrane protein
	?	NC_002947	= 3767379	39 (0.740)					coding (812/1290 nt)	PP_3329	membrane protein

ATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTCCAGCGGTAAATGATCCCGGTACAGCCATCGACATCATTGGCCGCGGCAT  >  NC_002947/3767243‑3767526                                                                                                                                         |                                                                                                                                                      aTTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGt                                                                                                                                           <  3:279074/149‑1 (MQ=255)         gcgcACCGAGATTCGAATTTTCCTCGAAGTTCGGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑Cg                                                                                                                                  <  2:313308/149‑1 (MQ=255)               cGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCa                                                                                                                            <  7:106121/149‑1 (MQ=255)                gagaTTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAg                                                                                                                           <  5:135120/149‑1 (MQ=255)                           tttCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCg                                                                                                               >  3:320587/1‑149 (MQ=255)                            ttCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCg                                                                                                               <  4:30483/148‑1 (MQ=255)                                    aGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGAcc                                                                                                      >  6:324643/1‑149 (MQ=255)                                             tGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCg                                                                                             >  2:276922/1‑149 (MQ=255)                                                   cTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGt                                                                                                                   <  7:44909/122‑1 (MQ=255)                                                   cTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGt                                                                                                                   >  8:44909/1‑122 (MQ=255)                                                             gAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCATGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGtgttgt                                                                              >  3:122121/1‑148 (MQ=255)                                                               gggTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCag                                                                           <  5:324643/149‑1 (MQ=255)                                                                     ggtggtggCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGa                                                                                                                                         >  2:134474/1‑83 (MQ=255)                                                                     ggtggtggCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGa                                                                                                                                         <  1:134474/83‑1 (MQ=255)                                                                      gtggtggCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATc                                                                      <  2:163817/147‑1 (MQ=255)                                                                      gtggtggCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATc                                                                      >  1:163817/1‑147 (MQ=255)                                                                       tggtggCACGGGCCTTGGCCGTGAATGGCGAGCCGCTTGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCTcc                                                                   >  4:195197/1‑149 (MQ=255)                                                                       tggtggCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGTATCGAGCATGACCCGCGCTTCGGGCTTTCg                                                                                     <  1:209171/132‑1 (MQ=255)                                                                       tggtggCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCtttag                                                                                     >  2:209171/1‑129 (MQ=255)                                                                         gtggCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTc                                                                 >  2:106414/1‑149 (MQ=255)                                                                                    cTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCtt                                                       >  3:208430/1‑148 (MQ=255)                                                                                        gCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTtctc                                                   <  4:173932/148‑1 (MQ=255)                                                                                        gCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTtctc                                                   <  2:53540/148‑1 (MQ=255)                                                                                        gCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTcc                                                  >  1:167260/1‑149 (MQ=255)                                                                                         ccGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTtctc                                                   >  2:187395/1‑147 (MQ=255)                                                                                              aaTGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTCCAGCgg                                             <  4:320587/148‑1 (MQ=255)                                                                                              aaTGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTCCAGCGGt                                            <  2:167260/149‑1 (MQ=255)                                                                                                tGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATgctcgccattcacggccaaggcccgtgccaccaccataccctcatgtacaaaggtgccaggcagaacttcgaggaaaattcgaatctcggtgcgcgttgcaatctt                                             <  8:155673‑M2/148‑107 (MQ=255)                                                                                                tGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATgctcgccattcacggccaaggcccgtgccaccaccataccctcatgtacaaaggtgccaggcagaacttcgaggaaaattcgaatctcggtgcgcgttgcaatctt                                             >  7:155673‑M2/1‑42 (MQ=255)                                                                                                  gCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATgctcgccattcacggccaaggcccgtgccaccaccataccctcatgtacaaaggtgccaggcagaacttcgaggaaaattcgaatctcggtgcgcgttgcaatcttgct                                          <  6:296609‑M2/149‑110 (MQ=255)                                                                                                    gAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTCCAGCGGTAAATGa                                      >  7:90762/1‑149 (MQ=255)                                                                                                        cGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTCCAGCGGTAAATGATccc                                  >  6:292577/1‑149 (MQ=255)                                                                                                         gCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTCCAGCGGTAAATGATCCCg                                 <  1:276922/149‑1 (MQ=255)                                                                                                           tCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGAc                                                                                                       <  5:47061/77‑1 (MQ=255)                                                                                                           tCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGAc                                                                                                       >  6:47061/1‑77 (MQ=255)                                                                                                             gATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTCCAGCGGTAAATGATCCCGGTAc                             <  1:187395/149‑1 (MQ=255)                                                                                                              aTGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTCCAGCGGTAAATGATCCCGGTAc                             <  3:195197/148‑1 (MQ=255)                                                                                                                   acTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTCCAGCGGTAAATGATCCCGGTACAGCCAt                       >  4:214038/1‑149 (MQ=255)                                                                                                                   acTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTCCAGCGGTAAATGATCCCGGTACAGCCAt                       >  4:209545/1‑149 (MQ=255)                                                                                                                     tGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTAGCGAGCGCTTTCTCCAGCGGTAAATGATCCCGGTACCGCCaac                      >  4:280191/1‑146 (MQ=255)                                                                                                                       gcgcgcTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGACTCGCGAGCGCTTTCTCCAGCGGTAAATGATCCCGGTACAGCCATCGa                    >  4:239627/1‑148 (MQ=255)                                                                                                                        cgcgcTGGACATCGAGATGCTCGCTGCCGTGACCGTACGGCCTCAGGAGAACGA‑TCGAGCATGACCCGCGCTTCGGGCATTCGGTGTTGTCAGAGATCGCCTCGCGACCGCTTTCTCCAGCGGTAAATGATCCCGGTACAGCCATAGa                    >  1:239988/1‑148 (MQ=255)                                                                                                                                      agaTGCTCGCTGGCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTCCAGCGGTAAATGATCCCGGTACAGCCATCGACATCATTGGCCGCGGc    <  2:239988/149‑1 (MQ=255)                                                                                                                                        aTgctcgccattcacggccaaggcccgtgccaccaccataccctcatgtacaaaggtgccaggcagaacttcgaggaaaattcgaatctcggtgcgcgttgcaatcttgctcagcgtgaggacatcgatgtgctgtacatagccggtct    <  6:220055‑M2/149‑148 (MQ=255)                                                                                                                                         tGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTCCAGCGGTAAATGATCCCGGTACAGCCATCGACATCATTGGCCGCGGCAt  <  8:90762/148‑1 (MQ=255)                                                                                                                                         |                                                                                                                                                      ATTGCAACGCGCACCGAGATTCGAATTTTCCTCGAAGTTCTGCCTGGCACCTTTGTACATGAGGGTATGGTGGTGGCACGGGCCTTGGCCGTGAATGGCGAGCCGCTCGATGACACTGGCGCGCTGGACATCGAGATGCTCGCTGCCGTGACCGT‑CGGCCTCAGGAGAACGT‑TCGAGCATGACCCGCGCTTCGGGCTTTCGGTGTTGTCAGAGATCGCCTCGCGAGCGCTTTCTCCAGCGGTAAATGATCCCGGTACAGCCATCGACATCATTGGCCGCGGCAT  >  NC_002947/3767243‑3767526

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.