New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3864820	51 (0.920)	5 (0.100)	4/236	NT	9.5%	coding (825/1320 nt)	PP_3414	methyl‑accepting chemotaxis transducer/sensory box protein
	?	NC_002947	= 3864855	48 (0.940)					coding (790/1320 nt)	PP_3414	methyl‑accepting chemotaxis transducer/sensory box protein

TGCCCGATCACATCCGACTGCCTGTTTACCGCGTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAGGCGGCCCTTGCTGTCGAAGATCGGGTTGTAGGAGGCCTCCAGAAAAACGGTCTGGCCCTGC  >  NC_002947/3864680‑3864967                                                                                                                                              |                                                                                                                                                     tGCCCGATCACATCCGACTGCCTGTTTACCGCGTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTgg                                                                                                                                               >  1:256881/1‑148 (MQ=255)   cccGATCACATCCGACTGCCTGTTTACCGCGTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTggca                                                                                                                                             <  5:340425/148‑1 (MQ=255)   cccGATCACATCCGACTGCCTGTTTACCGCGTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTgg                                                                                                                                               <  1:58541/146‑1 (MQ=255)      gATCACATCCGACTGCCTGTTTACCGCGTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTggcatggg                                                                                                                                         >  3:180236/1‑149 (MQ=255)       aTCACATCCGACTGCCTGTTTACCGCGTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCg                                                                                                                                                     <  5:61723/136‑1 (MQ=255)       aTCACATCCGACTGCCTGTTTACCGCGTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCg                                                                                                                                                     >  6:61723/1‑136 (MQ=255)             tCCGACTGCCTGTTTACCGCGTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTggcatgggcggcatg                                                                                                                                  <  3:280328/149‑1 (MQ=255)             tCCGACTGCCTGTTTACCGCGTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTggcatgggcggcatg                                                                                                                                  >  1:198286/1‑149 (MQ=255)                gACTGCCTGTTTACCGCGTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTggcatgggcggcatgggc                                                                                                                               >  1:205927/1‑149 (MQ=255)                      cTGTTTACCGCGTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑AGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑Ct                                                                                                                        >  6:361686/1‑149 (MQ=255)                       tGTTTACCGCGTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑Ctt                                                                                                                       >  4:206490/1‑149 (MQ=255)                            aCCGCGTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCt                                                                                                                   <  4:79001/148‑1 (MQ=255)                             ccGCGTCGTTACTGGTCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGTTTAGCTTCACGGCCTGC‑TGCACCACTTCGGTCCGCTTGCGCGCGCAGGCATCGGTGTGCACCGAGCTTGCATGGGCGGCTTGGGCGGCG‑CTTTGCTgt                                                                                                                 <  3:107843/149‑2 (MQ=255)                             ccGCGTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGg                                                                                                                 >  3:206490‑M2/1‑148 (MQ=255)                              cgcgTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGgg                                                                                                                <  7:177897‑M2/149‑3 (MQ=255)                               gcgTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGggt                                                                                                               >  5:203449‑M2/1‑146 (MQ=255)                               gcgTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGggt                                                                                                               >  5:361686‑M2/1‑146 (MQ=255)                               gcgTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGggt                                                                                                               >  4:180236‑M2/1‑146 (MQ=255)                               gcgTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGggt                                                                                                               >  8:110762‑M2/1‑146 (MQ=255)                                cgTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGggtg                                                                                                              <  3:273737‑M2/149‑5 (MQ=255)                                     aTACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCcagcaaagcgccgcccatgccgcccatgccagctcggtgcagac                                                                                                          >  7:137755‑M1/1‑105 (MQ=255)                                     aTACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCcagcaaagcgccgcccatgccgcccatgccagctcggtgcagac                                                                                                          <  8:137755‑M1/149‑45 (MQ=255)                                     aTACTGCGCGCAGCGTCGATAAGCTCCTCGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCcagcaaagcgccgcccatgccgcccatgccagctcggtgcagac                                                                                                          <  6:185824‑M1/149‑45 (MQ=255)                                      tACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGggtgcagacc                                                                                                        >  1:150898‑M2/1‑139 (MQ=255)                                          gcgcgcAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGCAGGCACCACTTCGGTCCCCTTGCGCGCGAAGGCAACGGTATGCACCGAGATGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGTTGCAGACCTGa                                                                                                     >  1:277292/1‑149 (MQ=255)                                           cgcgcAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGa                                                                                                     <  2:256881/147‑1 (MQ=255)                                            gcgcAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATgg                                                                                                  >  2:68624/1‑149 (MQ=255)                                                 gCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGAt                                                                                             <  3:302033/149‑1 (MQ=255)                                                      gtTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATgg                                                                                                  <  5:329584/139‑1 (MQ=255)                                                      gtTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATgg                                                                                                  >  6:329584/1‑139 (MQ=255)                                                             tCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCaaa                                                                                 >  1:40482/1‑149 (MQ=255)                                                               cTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACt                                                                               <  2:205927/149‑1 (MQ=255)                                                                  ggAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACtt                                                                              <  4:273737/147‑1 (MQ=255)                                                                  ggAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGa                                                                            <  2:277292/149‑1 (MQ=255)                                                                   gAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGAc                                                                           <  2:198286/149‑1 (MQ=255)                                                                       tCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACt                                                                       >  5:214895/1‑149 (MQ=255)                                                                         tGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACttt                                                                     >  2:9707/1‑149 (MQ=255)                                                                          gCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTggcatgggcggcatgg                                                                                                                                 <  2:311749/89‑1 (MQ=255)                                                                          gCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTggcatgggcggcatgg                                                                                                                                 >  1:311749/1‑89 (MQ=255)                                                                          gCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGggt                                                                                                               >  6:165096‑M2/1‑103 (MQ=255)                                                                          gCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGggt                                                                                                               <  5:165096‑M2/106‑4 (MQ=255)                                                                           cTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACtt                                                                      <  5:194891/146‑1 (MQ=255)                                                                            tCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTc                                                                                          <  8:59495/125‑1 (MQ=255)                                                                            tCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTc                                                                                          >  7:59495/1‑125 (MQ=255)                                                                              gATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGca                                                                  >  4:332271/1‑147 (MQ=255)                                                                                   ccTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAggcgg                                                           >  2:191943/1‑149 (MQ=255)                                                                                    cTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAggcggc                                                          <  8:177897/149‑1 (MQ=255)                                                                                    cTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAggcggc                                                          >  7:256490/1‑149 (MQ=255)                                                                                    cTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAggcggc                                                          >  4:348773/1‑149 (MQ=255)                                                                                      gCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAGGCGGccc                                                        >  8:336656/1‑149 (MQ=255)                                                                                        aCCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAGGCGGCCCtt                                                      <  5:45266/149‑1 (MQ=255)                                                                                               gc‑tgcACCACTTCGGTCCCCTTGCGCGCGCAGGCTTCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAAc                                                                                <  5:177270/116‑1 (MQ=255)                                                                                               gc‑tgcACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAAc                                                                                >  6:177270/1‑116 (MQ=255)                                                                                                    caccacTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCcagcaaagcgccgcccatgccgcccatgccagctcggtgc                                                                                                              <  2:92751‑M1/83‑41 (MQ=255)                                                                                                    caccacTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCcagcaaagcgccgcccatgccgcccatgccagctcggtgc                                                                                                              >  1:92751‑M1/1‑43 (MQ=255)                                                                                                      ccacTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAGGCGGCCCTTGCTGTCGAAGATc                                         <  3:332271/149‑1 (MQ=255)                                                                                                             ggTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAGGCGGCCCTTGCTGTCGAAGATCGGGTTGt                                  <  8:256490/149‑1 (MQ=255)                                                                                                                 cccTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGAt                                                                                             <  6:80685/86‑1 (MQ=255)                                                                                                                 cccTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGAt                                                                                             >  5:80685/1‑86 (MQ=255)                                                                                                                 acgctGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAGGCGGCCCTTGCTGTCGAAGATCGGGTTGTagga                              <  7:241310/145‑1 (MQ=255)                                                                                                                  ccTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAGGCGGCCCTTGCTGTCGAAGATCGGGTTGTaggag                             <  1:191943/149‑1 (MQ=255)                                                                                                                  ccTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAGGCGGCCCTTGCTGTCGAAGATCGGGTTGTaggag                             >  5:60706/1‑149 (MQ=255)                                                                                                                   cTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAGGCGGCCCTTGCTGTCGAAGATCGGGTTGTaggcgg                            >  8:195808/1‑149 (MQ=255)                                                                                                                                 cATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAGGCGGCCCTTGCTGTCGAAGATCGGGTTGTAGGAGGCCTCCAGAAAAACg              <  1:68624/149‑1 (MQ=255)                                                                                                                                  aTCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAGGCGGCCCt                                                       >  3:21362/1‑107 (MQ=255)                                                                                                                                  aTCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAGGCGGCCCt                                                       <  4:21362/107‑1 (MQ=255)                                                                                                                                  aTCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAGGCGGCCCTTGCTGTCGAAGATCGGGTTGTAGGAGGCCTCCAGAAAAACgg             >  4:191663/1‑149 (MQ=255)                                                                                                                                     ggTCTGCACCcagcaaagcgccgcccatgccgcccatgccagctcggtgcagaccgatgcctgcgcgcgcaaggggaccgaagtggtgcagcaggcggtgcaggtaatcgagcagatttcccaggagcttaacgacgctgcgcgcagta           >  1:150898‑M1/1‑10 (MQ=255)                                                                                                                                      gTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCGTCTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAGGCGGCCCTTGCTGTCGAAGATCGGGTTGTAGGAGGCCTCCAGAAAAACGGTCt          >  1:59450/1‑149 (MQ=255)                                                                                                                                      gTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGggtgcagaccgatgcctgcgcgcgcaaggggaccgaagtggtgcagcaggcggtgcaggtaatcgagcagatttccgaggagcttatcgacgctgcgcgcagtat         <  6:185824‑M2/149‑106 (MQ=255)                                                                                                                                      gTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGggtgcagaccgatgcctgcgcgcgcaaggggaccgaagtggtgcagcaggcggtgcaggtaatcgagcagatttcccaggagcttaacgacgctgcgcgcagtat         >  7:137755‑M2/1‑44 (MQ=255)                                                                                                                                      gTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGggtgcagaccgatgcctgcgcgcgcaaggggaccgaagtggtgcagcaggcggtgcaggtaatcgagcagatttcccaggagcttaacgacgctgcgcgcagtat         <  8:137755‑M2/149‑106 (MQ=255)                                                                                                                                          gCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGggtgcagaccgatgcctgcgcgcgcaaggggaccgaagtggtg                                                                       >  1:92751‑M2/1‑40 (MQ=255)                                                                                                                                          gCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGggtgcagaccgatgcctgcgcgcgcaaggggaccgaagtggtg                                                                       <  2:92751‑M2/83‑44 (MQ=255)                                                                                                                                           cACCcagcaaagcgccgcccatgccgcccatgccagctcggtgcagaccgatgcctgcgcgcgcaaggggaccgaagtggtgcagcaggcggtgcaggtaatcgagcagatttcccaggagcttaacgacgctgcgcgcagtatcgacg     <  3:273737‑M1/149‑146 (MQ=255)                                                                                                                                            aCCcagcaaagcgccgcccatgccgcccatgccagctcggtgcagaccgatgcctgcgcgcgcaaggggaccgaagtggtgcagcaggcggtgcaggtaatcgagcagatttcccaggagcttaacgacgctgcgcgcagtatcgacgc    >  8:110762‑M1/1‑3 (MQ=255)                                                                                                                                            aCCcagcaaagcgccgcccatgccgcccatgccagctcggtgcagaccgatgcctgcgcgcgcaaggggaccgaagtggtgcagcaggcggtgcaggtaatcgagcagatttcccaggagcttaacgacgctgcgcgcagtatcgacgc    >  5:203449‑M1/1‑3 (MQ=255)                                                                                                                                            aCCcagcaaagcgccgcccatgccgcccatgccagctcggtgcagaccgatgcctgcgcgcgcaaggggaccgaagtggtgcagcaggcggtgcaggtaatcgagcagatttcccaggagcttaacgacgctgcgcgcagtatcgacgc    >  4:180236‑M1/1‑3 (MQ=255)                                                                                                                                            aCCcagcaaagcgccgcccatgccgcccatgccagctcggtgcagaccgatgcctgcgcgcgcaaggggaccgaagtggtgcagcaggcggtgcaggtaatcgagcagatttcccaggagcttaacgacgctgcgcgcagtatcgacgc    >  5:361686‑M1/1‑3 (MQ=255)                                                                                                                                            aCCcagcaaagcgccgcccatgccgcccatgccagctcggtgcagaccgatgcctgcgcgcgcaaggggaccgaagtggtgcagcaggcggtgcaggtaatcgagc                                               >  6:165096‑M1/1‑3 (MQ=255)                                                                                                                                            aCCcagcaaagcgccgcccatgccgcccatgccagctcggtgcagaccgatgcctgcgcgcgcaaggggaccgaagtggtgcagcaggcggtgcaggtaatcgagc                                               <  5:165096‑M1/106‑104 (MQ=255)                                                                                                                                            aCCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAGGCGGCCCTTGCTGTCGAAGATCGGGTTGTAGGAGGCCTCCAGAAAAACGGTCTGGCCCTg   >  6:168736/1‑149 (MQ=255)                                                                                                                                            aCCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAGGCGGCCCTTGCTGTCGAAGATCGGGTTGTAGGAGGCCTCCAGAAAAACGGTCTGGCCCTg   >  6:243870/1‑149 (MQ=255)                                                                                                                                             cccagcaaagcgccgcccatgccgcccatgccagctcggtgcagaccgatgcctgcgcgcgcaaggggaccgaagtggtgcagcaggcggtgcaggtaatcgagcagatttcccaggagcttaacgacgctgcgcgcagtatcgacgcg   <  7:177897‑M1/149‑148 (MQ=255)                                                                                                                                             ccGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAGGCGGCCCTTGCTGTCGAAGATCGGGTTGTAGGAGGCCTCCAGAAAAACGGTCTGGCCCTGc  <  7:336656/149‑1 (MQ=255)                                                                                                                                             ccGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAGGCGGCCCTTGCTGTCGAAGATCGGGTTGTAGGAGGCCTCCAGAAAAACGGTCTGGCCCTGc  >  8:55345/1‑149 (MQ=255)                                                                                                                                              ccagcaaagcgccgcccatgccgcccatgccagctcggtgcagaccgatgcctgcgcgcgcaaggggaccgaagtggtgcagcaggcggtgcaggtaatcgagcagatttcccaggagcttaacgacgctgcgcgcagtatcgacgcgg  >  3:206490‑M1/1‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                     TGCCCGATCACATCCGACTGCCTGTTTACCGCGTCGATACTGCGCGCAGCGTCGTTAAGCTCCTGGGAAATCTGCTCGATTACCTGCACCGCCTGC‑TGCACCACTTCGGTCCCCTTGCGCGCGCAGGCATCGGTCTGCACCGAGCTGGCATGGGCGGCATGGGCGGCG‑CTTTGCTGGGTGCAGACCTGATGGGTGATGTCGCTGGCAAACTTGACCACTTTGCACAGGCGGCCCTTGCTGTCGAAGATCGGGTTGTAGGAGGCCTCCAGAAAAACGGTCTGGCCCTGC  >  NC_002947/3864680‑3864967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.