New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4400544 =	42 (0.760)	4 (0.080)	4/246	NT	8.9%	coding (614/1272 nt)	PP_3879	HK97 family portal protein
	?	NC_002947	4400580 =	42 (0.790)					coding (578/1272 nt)	PP_3879	HK97 family portal protein

GAAGGTCATGCCTTCCTGCAACATCGCGACCTTTTTCGCGTTGTCGATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATGGGTAGCGG  >  NC_002947/4400396‑4400692                                                                                                                                                     |                                                                                                                                                     atttgctccccgtctaccgggttggtgggcacgacccgctacccatgcggctgattcatcatgtgcgctggcacacgaagaaccattacaccggcctctctccggttgagctgcacgccgatgccgtaggcctggcgcaggctgtgagg                                                                                                                                                      >  4:341768‑M1/149‑149 (MQ=255)               taccgggttggtgggcacgacccgctacccatgcggctgattcatcatgtgcgctggcacacgaagaaccattacaccggcctctctccggttgagctgcacgccgatgccgtaggcctggcgcaggctgtgagGCAGTGCCGTTGGc                                                                                                                                         <  8:29941‑M1/14‑1 (MQ=255)                   cAACATCGCGACCTTTTTCGCGTTGTCGATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCaaa                                                                                                                                      <  3:89178/147‑1 (MQ=255)                          gcgACCTTTTTCGCGTTGTCGATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGcc                                                                                                                             >  4:352334/1‑149 (MQ=255)                          gcgACCTTTTTCGCGTTGTCGATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGcc                                                                                                                             >  1:215798/1‑149 (MQ=255)                           cgACCTTTTTCGCGTTGTCGATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGccc                                                                                                                            >  8:706/1‑149 (MQ=255)                                        gTTGTCGATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTca                                                                                                               >  2:339333/1‑149 (MQ=255)                                        gTTGTCGATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTc                                                                                                                <  3:241318/148‑1 (MQ=255)                                        gTTGTCGATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTc                                                                                                                >  4:241318/1‑148 (MQ=255)                                         ttGTCGATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTcac                                                                                                              <  2:289934/149‑1 (MQ=255)                                          cccatgcggctgattcatcatgtgcgctggcacacgaagaaccattacaccggcctctctccggttgagctgcacgccgatgccgtaggcctggcgcaggctgtgagGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTcaca                                                                                                             >  7:29941‑M1/108‑149 (MQ=255)                                            tCGATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGc                                                                                                           <  7:305986/149‑1 (MQ=255)                                              gATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCt                                                                                                         >  5:250370/1‑149 (MQ=255)                                                  cccGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTgcgc                                                                                                     <  7:291938/149‑1 (MQ=255)                                                     gagaACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAg                                                                                                  <  3:352334/149‑1 (MQ=255)                                                     gagaACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCT‑AATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCCCAGCCTGCGCCAgc                                                                                                 >  8:294460/1‑148 (MQ=255)                                                        tcatcatgtgcgctggcacacgaagaaccattacaccggcctctctccggttgagctgcacgccgatgccgtaggcctggcgcaggctgtgagGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTca                                                                                                               >  8:274661‑M1/94‑133 (MQ=255)                                                        tcatcatgtgcgctggcacacgaagaaccattacaccggcctctctccggttgagctgcacgccgatgccgtaggcctggcgcaggctgtgagGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTca                                                                                                               <  7:274661‑M1/40‑1 (MQ=255)                                                             gttgCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACg                                                                                           <  2:7251/148‑1 (MQ=255)                                                                  cccACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCg                                                                                     <  2:215798/149‑1 (MQ=255)                                                                              ggATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGAGTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGGGGAGCta                                                                          >  6:41914/1‑147 (MQ=255)                                                                                   cGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCgg                                                                    <  6:250370/149‑1 (MQ=255)                                                                                     gTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCg                                                                     >  8:274292/1‑146 (MQ=255)                                                                                            cTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGc                                                            <  1:2279/148‑1 (MQ=255)                                                                                                     tCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATg                                                  >  8:98743/1‑149 (MQ=255)                                                                                                      ccTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGgt                                                        <  4:161755/142‑1 (MQ=255)                                                                                                      ccTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGgt                                                        >  3:161755/1‑142 (MQ=255)                                                                                                       cTTGATTGGCGGTGCCTCTTTCGGGCGCTCGATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGt                                                >  2:225235/1‑149 (MQ=255)                                                                                                       cTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCTCCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATg                                                  <  4:154683/147‑1 (MQ=255)                                                                                                       cTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATc                                                                                      <  8:210334/111‑1 (MQ=255)                                                                                                       cTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATc                                                                                      >  7:210334/1‑111 (MQ=255)                                                                                                       cTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGc                                                            <  8:99774/137‑1 (MQ=255)                                                                                                       cTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGc                                                            >  7:99774/1‑137 (MQ=255)                                                                                                       cTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGt                                                >  5:164189/1‑149 (MQ=255)                                                                                                            ttGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGttcttc                                           <  7:706/149‑1 (MQ=255)                                                                                                                cGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCgtgt                                       >  4:275673/1‑149 (MQ=255)                                                                                                                               gcgcTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGAGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACatgat                        <  5:41914/149‑1 (MQ=255)                                                                                                                                 gcTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAACTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACatga                         <  6:78829/146‑1 (MQ=255)                                                                                                                                 gcTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAACTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACatga                         >  5:78829/1‑146 (MQ=255)                                                                                                                                   tCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATg                                                  <  8:332154/119‑1 (MQ=255)                                                                                                                                   tCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATg                                                  >  7:332154/1‑119 (MQ=255)                                                                                                                                   tCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTAAACCGGAGACAGCCCGGTGTACTGGTTCTTCGAGTGCCAGCGCACATGATGaa                     >  4:224013/1‑148 (MQ=255)                                                                                                                                     aaTGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCa                  <  6:164189/149‑1 (MQ=255)                                                                                                                                            ccacTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCa                                   >  8:249881/1‑125 (MQ=255)                                                                                                                                            ccacTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCa                                   <  7:249881/125‑1 (MQ=255)                                                                                                                                             cacTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATg          >  5:212669/1‑149 (MQ=255)                                                                                                                                               cTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATggg        <  7:98743/149‑1 (MQ=255)                                                                                                                                                  aCCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATGGGTAg     <  1:225235/149‑1 (MQ=255)                                                                                                                                                     GCAGTGCCGTTGGCAATTGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATGGGTAGCgg  >  7:294460‑M1/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GAAGGTCATGCCTTCCTGCAACATCGCGACCTTTTTCGCGTTGTCGATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATGGGTAGCGG  >  NC_002947/4400396‑4400692

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.