New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4400544 =	42 (0.760)	4 (0.080)	4/246	NT	8.9%	coding (614/1272 nt)	PP_3879	HK97 family portal protein
	?	NC_002947	4400580 =	42 (0.790)					coding (578/1272 nt)	PP_3879	HK97 family portal protein

GTTGTCGATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATGGGTAGCGGGTCGTGCCCACCAACCCGGTAGACGGGGAGCAAAT  >  NC_002947/4400435‑4400727                                                                                                                                                  |                                                                                                                                                    gTTGTCGATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTca                                                                                                                                                  >  2:339333/1‑149 (MQ=255) gTTGTCGATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTc                                                                                                                                                   >  4:241318/1‑148 (MQ=255) gTTGTCGATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTc                                                                                                                                                   <  3:241318/148‑1 (MQ=255)  ttGTCGATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTcac                                                                                                                                                 <  2:289934/149‑1 (MQ=255)   cccatgcggctgattcatcatgtgcgctggcacacgaagaaccattacaccggcctctctccggttgagctgcacgccgatgccgtaggcctggcgcaggctgtgagGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTcaca                                                                                                                                                >  7:29941‑M1/108‑149 (MQ=255)     tCGATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGc                                                                                                                                              <  7:305986/149‑1 (MQ=255)       gATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCt                                                                                                                                            >  5:250370/1‑149 (MQ=255)           cccGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTgcgc                                                                                                                                        <  7:291938/149‑1 (MQ=255)              gagaACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAg                                                                                                                                     <  3:352334/149‑1 (MQ=255)              gagaACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCT‑AATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCCCAGCCTGCGCCAgc                                                                                                                                    >  8:294460/1‑148 (MQ=255)                 tcatcatgtgcgctggcacacgaagaaccattacaccggcctctctccggttgagctgcacgccgatgccgtaggcctggcgcaggctgtgagGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTca                                                                                                                                                  >  8:274661‑M1/94‑133 (MQ=255)                 tcatcatgtgcgctggcacacgaagaaccattacaccggcctctctccggttgagctgcacgccgatgccgtaggcctggcgcaggctgtgagGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTca                                                                                                                                                  <  7:274661‑M1/40‑1 (MQ=255)                      gttgCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACg                                                                                                                              <  2:7251/148‑1 (MQ=255)                           cccACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCg                                                                                                                        <  2:215798/149‑1 (MQ=255)                                       ggATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGAGTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGGGGAGCta                                                                                                             >  6:41914/1‑147 (MQ=255)                                            cGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCgg                                                                                                       <  6:250370/149‑1 (MQ=255)                                              gTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCg                                                                                                        >  8:274292/1‑146 (MQ=255)                                                     cTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGc                                                                                               <  1:2279/148‑1 (MQ=255)                                                              tCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATg                                                                                     >  8:98743/1‑149 (MQ=255)                                                               ccTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGgt                                                                                           >  3:161755/1‑142 (MQ=255)                                                               ccTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGgt                                                                                           <  4:161755/142‑1 (MQ=255)                                                                cTTGATTGGCGGTGCCTCTTTCGGGCGCTCGATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGt                                                                                   >  2:225235/1‑149 (MQ=255)                                                                cTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCTCCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATg                                                                                     <  4:154683/147‑1 (MQ=255)                                                                cTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATc                                                                                                                         >  7:210334/1‑111 (MQ=255)                                                                cTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATc                                                                                                                         <  8:210334/111‑1 (MQ=255)                                                                cTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGc                                                                                               <  8:99774/137‑1 (MQ=255)                                                                cTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGc                                                                                               >  7:99774/1‑137 (MQ=255)                                                                cTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGt                                                                                   >  5:164189/1‑149 (MQ=255)                                                                     ttGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGttcttc                                                                              <  7:706/149‑1 (MQ=255)                                                                         cGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCgtgt                                                                          >  4:275673/1‑149 (MQ=255)                                                                                        gcgcTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGAGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACatgat                                                           <  5:41914/149‑1 (MQ=255)                                                                                          gcTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAACTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACatga                                                            >  5:78829/1‑146 (MQ=255)                                                                                          gcTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAACTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACatga                                                            <  6:78829/146‑1 (MQ=255)                                                                                            tCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATg                                                                                     >  7:332154/1‑119 (MQ=255)                                                                                            tCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATg                                                                                     <  8:332154/119‑1 (MQ=255)                                                                                            tCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTAAACCGGAGACAGCCCGGTGTACTGGTTCTTCGAGTGCCAGCGCACATGATGaa                                                        >  4:224013/1‑148 (MQ=255)                                                                                              aaTGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCa                                                     <  6:164189/149‑1 (MQ=255)                                                                                                     ccacTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCa                                                                      <  7:249881/125‑1 (MQ=255)                                                                                                     ccacTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCa                                                                      >  8:249881/1‑125 (MQ=255)                                                                                                      cacTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATg                                             >  5:212669/1‑149 (MQ=255)                                                                                                        tgtgaggcagtacgcgggcaagtcatttgccaacggcactgcCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATggg                                           >  7:29941‑M2/43‑149 (MQ=255)                                                                                                        cTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATggg                                           <  7:98743/149‑1 (MQ=255)                                                                                                          tgaggcagtacgcgggcaagtcatttgccaacggcactgcCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACAtgatga                                                         <  7:274661‑M2/93‑1 (MQ=255)                                                                                                          tgaggcagtacgcgggcaagtcatttgccaacggcactgcCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACAtgatga                                                         >  8:274661‑M2/41‑133 (MQ=255)                                                                                                           aCCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATGGGTAg                                        <  1:225235/149‑1 (MQ=255)                                                                                                              GCAGTGCCGTTGGCAATTGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATGGGTAGCgg                                     >  7:294460‑M1/1‑149 (MQ=255)                                                                                                                            aaaTGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATGGGTAGCGGGTCGTGCCCACCaa                       >  6:115736/1‑149 (MQ=255)                                                                                                                            aaaTGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATGGGTAGCGGGTCGTGCCCACCaa                       >  2:163487/1‑149 (MQ=255)                                                                                                                              aTGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATGGGTAGCGGGTCGTGCCCACCAAcc                     <  7:274292/149‑1 (MQ=255)                                                                                                                                  cTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATGGGTAGCGGGTCGTGCCCACCAACCCgg                  >  1:15781/1‑148 (MQ=255)                                                                                                                                    gccaacggcactgcCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATGGGTAGCGGGTCGTGCCCACCAACCCGGTa                <  8:29941‑M2/134‑1 (MQ=255)                                                                                                                                      cccGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATGGGTAGCGGGTCGTGCCCACCAACCCGGTAGa              <  3:275673/148‑1 (MQ=255)                                                                                                                                       ccGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCgg                                                                                            >  4:278517/1‑69 (MQ=255)                                                                                                                                       ccGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCgg                                                                                            <  3:278517/69‑1 (MQ=255)                                                                                                                                        cgcgTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATGGGTAGCGGGTCGTGCCCACCAACCCGGTAGACgg           <  6:212669/149‑1 (MQ=255)                                                                                                                                        cgcgTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATGGGTAGCGGGTCGTGCCCACCAACCCGGTAGACgg           <  1:339333/149‑1 (MQ=255)                                                                                                                                           gTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATGGGTAGCGGGTCGTGCCCACCAACCCGGTAGACGGGGa        <  1:163487/149‑1 (MQ=255)                                                                                                                                                 cCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATGGGTAGCGGGTCGTGCCCACCAACCCGGTAGACGGGGAGCAAAt  >  4:341768‑M2/2‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GTTGTCGATCCCCGAGAACTTGTTGCCCCACTGATCGAGGATGCGGTCAATACTGGACTGCTCCTTGATTGGCGGTGCCTCTTTCGGGCGCTCAATGACACCACTCACCGCAGTGCCGTTGGCAAATGACTTGCCCGCGTACTGCCTCACAGCCTGCGCCAGGCCTACGGCATCGGCGTGCAGCTCAACCGGAGAGAGGCCGGTGTAATGGTTCTTCGTGTGCCAGCGCACATGATGAATCAGCCGCATGGGTAGCGGGTCGTGCCCACCAACCCGGTAGACGGGGAGCAAAT  >  NC_002947/4400435‑4400727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.