New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5661040	37 (0.670)	5 (0.100)	5/236	NT	12.0%	coding (665/1701 nt)	ligB	DNA ligase B
	?	NC_002947	= 5661069	39 (0.760)					coding (694/1701 nt)	ligB	DNA ligase B

GACCTGCACTTGCAAGGTGAGCTGTATCTGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGC  >  NC_002947/5660895‑5661185                                                                                                                                                  |                                                                                                                                                  gACCTGCACTTGCAAGGTGAGCTGTATCTGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCgt                                                                                                                                                >  2:30169/1‑149 (MQ=255) gACCTGCACTTGCAAGGTGAGCTGTATCTGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCgt                                                                                                                                                <  4:3903/149‑1 (MQ=255)     tGCACTTGCAAGGTGAGCTGTATCTGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGAgg                                                                                                                                            >  8:143/1‑149 (MQ=255)                 gTGAGCTGTATCTGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACG‑CCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACg                                                                                                                               <  4:198967/149‑1 (MQ=255)                        gTATCTGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGcccc                                                                                                                          >  6:258221/1‑148 (MQ=255)                         tATCTGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGcccc                                                                                                                          <  3:205030/147‑1 (MQ=255)                           tCTGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAg                                                                                                                       <  7:158653/148‑1 (MQ=255)                           tCTGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAg                                                                                                                       >  7:229149/1‑148 (MQ=255)                             tGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTgg                                                                                                                                            >  4:121051/1‑125 (MQ=255)                             tGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTgg                                                                                                                                            <  3:121051/125‑1 (MQ=255)                               cgcCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGc                                                                                                                      <  6:95668/145‑1 (MQ=255)                               cgcCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaaca                                                                                                                  >  8:229149‑M2/1‑145 (MQ=255)                               cgcCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaac                                                                                                                   >  2:115510‑M2/1‑145 (MQ=255)                               cgcCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaa                                                                                                                    >  1:30169‑M2/1‑145 (MQ=255)                                     gACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTgctcggggccgtgcggccagccccacacgaacaggccg                                                                                                             <  7:71456‑M1/148‑39 (MQ=255)                                     gACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggcc                                                                                                              >  5:239122‑M2/1‑139 (MQ=255)                                          aCATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGcc                                                                                                       <  6:58053/149‑1 (MQ=255)                                            aTGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTgctcggggccgtgcggccagccccacacgaa                                                                                                                    >  7:22681‑M1/1‑103 (MQ=255)                                            aTGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTgctcggggccgtgcggccagccccacacgaa                                                                                                                    <  8:22681‑M1/134‑32 (MQ=255)                                              gtgCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGc                                                                                                   >  6:52360/1‑149 (MQ=255)                                               tgCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGcc                                                                                                  <  5:52360/149‑1 (MQ=255)                                                     ccAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTg                                                                                            >  5:194348/1‑149 (MQ=255)                                                      cAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTgg                                                                                           <  6:128085/149‑1 (MQ=255)                                                            aggcagCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTgctcggggccgtgcggccagccccacacgaacaggccgatagcgttgc                                                                                                   >  6:272117‑M1/1‑87 (MQ=255)                                                            aggcagCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTgctcggggccgtgcggccagccccacacgaacaggccgatagcgttgc                                                                                                   <  5:272117‑M1/135‑49 (MQ=255)                                                                     cAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTc                                                                            <  5:258221/149‑1 (MQ=255)                                                                       acccccGGGGTACCGTGCCTGGGCTGCTGGCAGGCAACCAACTGCCTGGCGCACAAGGCAACGCTCTCGGCCTGTGCGGGTGGGGCTGGCCGCCCGGCCCCGAGCAACAGGCCCAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCg                                                                          <  8:117948/146‑1 (MQ=255)                                                                          cccGGGCTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTCGGTTTTCCGGa                                                                        >  2:58728/1‑148 (MQ=255)                                                                           ccGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGAca                                                                      <  7:143/149‑1 (MQ=255)                                                                                            ggCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCa                                                                                                >  7:19046/1‑106 (MQ=255)                                                                                            ggCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCa                                                                                                <  8:19046/106‑1 (MQ=255)                                                                                            ggCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATc                                                     >  1:270731/1‑149 (MQ=255)                                                                                               tgctCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTAc                                                           >  1:211098/1‑140 (MQ=255)                                                                                               tgctCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTAc                                                           <  2:211098/140‑1 (MQ=255)                                                                                                 ctCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCAt                                                >  4:79302/1‑149 (MQ=255)                                                                                                    gcacgcaAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGa                                             >  1:133709/1‑149 (MQ=255)                                                                                                        gcaagcaaCTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGc                                                        >  1:310287/1‑134 (MQ=255)                                                                                                        gcaagcaaCTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGc                                                        <  2:310287/134‑1 (MQ=255)                                                                                                                    ctgGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCGCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATgca                             <  1:58728/149‑1 (MQ=255)                                                                                                                    ctgGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATgca                             <  2:294808/149‑1 (MQ=255)                                                                                                                     tgGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATgcag                            >  1:7603/1‑149 (MQ=255)                                                                                                                       gcgcACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATgcag                            <  6:284917/147‑1 (MQ=255)                                                                                                                                gCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcct                               <  5:272117‑M2/135‑88 (MQ=255)                                                                                                                                gCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcct                               >  6:272117‑M2/1‑48 (MQ=255)                                                                                                                                gCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGgcgc                 <  2:133709/149‑1 (MQ=255)                                                                                                                                     gCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCa            >  4:21264/1‑149 (MQ=255)                                                                                                                                          cGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcctgccttggcttgcacatgttcgtc        <  7:71456‑M2/148‑111 (MQ=255)                                                                                                                                           ggCCTGTTgctcggggccgtgcggccagccccacacgaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcctgccttggcttgcacatgttcgtc        >  5:239122‑M1/1‑8 (MQ=255)                                                                                                                                           ggCCTGTGCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTGTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGt       <  2:265680/148‑1 (MQ=255)                                                                                                                                            gCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTAt     >  8:322172/1‑149 (MQ=255)                                                                                                                                             ccTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATgca                             >  7:235489/1‑124 (MQ=255)                                                                                                                                             ccTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATgca                             <  8:235489/124‑1 (MQ=255)                                                                                                                                               tGTTgctcggggccgtgcggccagccccacacgaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcctgccttggcttgcacatgttcgtccaggcg  >  8:229149‑M1/1‑4 (MQ=255)                                                                                                                                               tGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTg         <  3:177013/142‑1 (MQ=255)                                                                                                                                               tGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTg         >  4:177013/1‑142 (MQ=255)                                                                                                                                                gTTgctcggggccgtgcggccagccccacacgaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcctgccttggcttgcacatgttcgtccaggcg  >  2:115510‑M1/1‑3 (MQ=255)                                                                                                                                                 ttgctcggggccgtgcggccagccccacacgaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcctgccttggcttgcacatgttcgtccaggcg  >  1:30169‑M1/1‑2 (MQ=255)                                                                                                                                                 ttCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcctgccttggcttgcacat               >  7:22681‑M2/1‑31 (MQ=255)                                                                                                                                                 ttCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcctgccttggcttgcacat               <  8:22681‑M2/134‑104 (MQ=255)                                                                                                                                                  |                                                                                                                                                  GACCTGCACTTGCAAGGTGAGCTGTATCTGCGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGC  >  NC_002947/5660895‑5661185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.