New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5661040	37 (0.670)	5 (0.100)	5/236	NT	12.0%	coding (665/1701 nt)	ligB	DNA ligase B
	?	NC_002947	= 5661069	39 (0.760)					coding (694/1701 nt)	ligB	DNA ligase B

CGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGCTCTGCTCTGCCCTTCGCCA  >  NC_002947/5660925‑5661204                                                                                                                                                 |                                                                                                                                        cgcCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGc                                                                                                                                         <  6:95668/145‑1 (MQ=255) cgcCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaaca                                                                                                                                     >  8:229149‑M2/1‑145 (MQ=255) cgcCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaac                                                                                                                                      >  2:115510‑M2/1‑145 (MQ=255) cgcCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaa                                                                                                                                       >  1:30169‑M2/1‑145 (MQ=255)       gACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggcc                                                                                                                                 >  5:239122‑M2/1‑139 (MQ=255)            aCATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGcc                                                                                                                          <  6:58053/149‑1 (MQ=255)                gtgCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGc                                                                                                                      >  6:52360/1‑149 (MQ=255)                 tgCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGcc                                                                                                                     <  5:52360/149‑1 (MQ=255)                       ccAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTg                                                                                                               >  5:194348/1‑149 (MQ=255)                        cAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTgg                                                                                                              <  6:128085/149‑1 (MQ=255)                                       cAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTc                                                                                               <  5:258221/149‑1 (MQ=255)                                         acccccGGGGTACCGTGCCTGGGCTGCTGGCAGGCAACCAACTGCCTGGCGCACAAGGCAACGCTCTCGGCCTGTGCGGGTGGGGCTGGCCGCCCGGCCCCGAGCAACAGGCCCAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCg                                                                                             <  8:117948/146‑1 (MQ=255)                                            cccGGGCTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTCGGTTTTCCGGa                                                                                           >  2:58728/1‑148 (MQ=255)                                             ccGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGAca                                                                                         <  7:143/149‑1 (MQ=255)                                                              ggCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCa                                                                                                                   >  7:19046/1‑106 (MQ=255)                                                              ggCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCa                                                                                                                   <  8:19046/106‑1 (MQ=255)                                                              ggCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATc                                                                        >  1:270731/1‑149 (MQ=255)                                                                 tgctCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTAc                                                                              >  1:211098/1‑140 (MQ=255)                                                                 tgctCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTAc                                                                              <  2:211098/140‑1 (MQ=255)                                                                   ctCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCAt                                                                   >  4:79302/1‑149 (MQ=255)                                                                      gcacgcaAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGa                                                                >  1:133709/1‑149 (MQ=255)                                                                          gcaagcaaCTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGc                                                                           <  2:310287/134‑1 (MQ=255)                                                                          gcaagcaaCTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGc                                                                           >  1:310287/1‑134 (MQ=255)                                                                                      ctgGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCGCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATgca                                                <  1:58728/149‑1 (MQ=255)                                                                                      ctgGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATgca                                                <  2:294808/149‑1 (MQ=255)                                                                                       tgGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATgcag                                               >  1:7603/1‑149 (MQ=255)                                                                                         gcgcACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATgcag                                               <  6:284917/147‑1 (MQ=255)                                                                                                  gCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcct                                                  <  5:272117‑M2/135‑88 (MQ=255)                                                                                                  gCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcct                                                  >  6:272117‑M2/1‑48 (MQ=255)                                                                                                  gCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGgcgc                                    <  2:133709/149‑1 (MQ=255)                                                                                                       gCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCa                               >  4:21264/1‑149 (MQ=255)                                                                                                            cGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcctgccttggcttgcacatgttcgtc                           <  7:71456‑M2/148‑111 (MQ=255)                                                                                                             ggCCTGTGCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTGTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGt                          <  2:265680/148‑1 (MQ=255)                                                                                                              gCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTAt                        >  8:322172/1‑149 (MQ=255)                                                                                                               ccTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATgca                                                >  7:235489/1‑124 (MQ=255)                                                                                                               ccTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATgca                                                <  8:235489/124‑1 (MQ=255)                                                                                                                 tGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTg                            >  4:177013/1‑142 (MQ=255)                                                                                                                 tGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTg                            <  3:177013/142‑1 (MQ=255)                                                                                                                   ttCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcctgccttggcttgcacat                                  >  7:22681‑M2/1‑31 (MQ=255)                                                                                                                   ttCGTGTGGGGCTGGCCGCACGGCCCCGAGCaacaggccgatagcgttgccttgtgcgccagtcagttgcttgcgtgcgagcagccctgccacggtaccccgggcgttggcgctgcctgccttggcttgcacat                                  <  8:22681‑M2/134‑104 (MQ=255)                                                                                                                      gtgtGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCgctctgc                <  3:79302/149‑1 (MQ=255)                                                                                                                        gtgGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCgctctgctc              >  3:68749/1‑149 (MQ=255)                                                                                                                          ggggCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGctctgctctg            <  3:21264/149‑1 (MQ=255)                                                                                                                            ggCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGCTCTGCTCTGcc          <  2:7603/149‑1 (MQ=255)                                                                                                                                ggCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGCTCTGCTCTGCCCTTc      <  2:270731/149‑1 (MQ=255)                                                                                                                                    gCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGt                          <  6:104501/125‑1 (MQ=255)                                                                                                                                    gCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGt                          >  5:104501/1‑125 (MQ=255)                                                                                                                                    gCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGCTCTGCTCTGCCCTTc      <  4:177972/145‑1 (MQ=255)                                                                                                                                    gCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGCTCTGCTCTGCCCTTc      >  3:177972/1‑145 (MQ=255)                                                                                                                                    gCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGCTCTGCTCTGCCCTTCGCCa  <  7:322172/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                        CGCCTGGACGAACATGTGCAAGCCAAGGCAGGCAGCGCCAACGCCCGGGGTACCGTGGCAGGGCTGCTCGCACGCAAGCAACTGACTGGCGCACAAGGCAACGCTATCGGCCTGTTCGTGTGGGGCTGGCCGCACGGCCCCGAGCAACAGGCCGAACGCCTCGCCCAGCTGGCACGACTGGGTTTTCCGGACAGCCAGCTTTACAGCATCGCCATCGACACGCTGGAGGATGCAGCACACTGGCGCGAGCACTGGTATCGCTCTGCTCTGCCCTTCGCCA  >  NC_002947/5660925‑5661204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.