New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	170160 =	48 (0.870)	3 (0.060)	3/248	NT	6.3%	coding (562/1221 nt)	PP_0159	family III CoA‑transferase
	?	NC_002947	170220 =	42 (0.780)					coding (622/1221 nt)	PP_0159	family III CoA‑transferase

CCGGCCGTCCGGAGGGTGAAGAAGGCGCAGGGCCGGTCAAGGTGGGTGTGGCGCTTACCGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTGGGTAATGCGCATCCTAATATAGTCCCTTACCAGGACTTTCCGACGGCAGATGGCGATTTCA  >  NC_002947/170074‑170364                                                                                                                                                    |                                                                                                                                                  ccGGCCGTCCGGAGGGTGAAGAAGGCGCAGGGCCGGTCAAGGTGGGTGTGGCGCTTACCGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATg                                                                                                                                                 <  5:367892/149‑1 (MQ=255) ccGGCCGTCCGGAGGGTGAAGAAGGCGCAGGGCCGGTCAAGGTGGGTGTGGCGCTTACCGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATg                                                                                                                                                 >  6:367892/1‑149 (MQ=255)  cGGCCGTCCGGAGGGTGAAGAAGGCGCAGGGCCGGTCAAGGTGGGTGTGGCGCTTACCGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCTCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATgg                                                                                                                                                >  6:342960/1‑149 (MQ=255)        tCCGGAGGGTGAAGAAGGCGCAGGGCCGGTCAAGGTGGGTGTGGCGCTTACCGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGc                                                                                                                                          >  4:128036/1‑149 (MQ=255)        tCCGGAGGGTGAAGAAGGCGCAGGGCCGGTCAAGGTGGGTGTGGCGCTTACCGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGc                                                                                                                                          <  2:74481/149‑1 (MQ=255)           ggAGGGTGAAGAAGGCGCAGGGCCGGTCAAGGTGGGTGTGGCGCTTACCGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTg                                                                                                                                       <  6:243143/149‑1 (MQ=255)             aGGGTGAAGAAGGCGCAGGGCCGGTCAAGGTGGGTGTGGCGCTTACCGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGAt                                                                                                                                     <  1:114154/149‑1 (MQ=255)             aGGGTGAAGAAGGCGCAGGGCCGGTCAAGGTGGGTGTGGCGCTTACCGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGAt                                                                                                                                     <  3:272399/149‑1 (MQ=255)                         ncgcAGGGCCGGTCAAGGTGGGTGTGGCGCTTACCGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGcc                                                                                                                         >  8:104530/2‑149 (MQ=255)                         gcgcAGGGCCGGTCAAGGTGGGTGTGGCGCTTACCGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGcc                                                                                                                         >  8:99539/1‑149 (MQ=255)                          cgcAGGGCCGGTCAAGGTGGGTGTGGCGCTTACCGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCTCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑t                                                                                                                       <  5:342960/149‑1 (MQ=255)                                     tCAAGGTGGGTGTGGCGCTTACCGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAAc                                                                                                            <  1:327276/149‑1 (MQ=255)                                         ggtgggtgTGGCGCTTACCGATATTCTGACGGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAgg                                                                                                        >  1:29934/1‑149 (MQ=255)                                         ggtgggtgTGGCGCTTACCGATATTCAGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAgg                                                                                                        >  1:60112/1‑149 (MQ=255)                                               tgtgGCGCTTACCGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTGTGCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGAt                                                                                                    >  1:94192/1‑148 (MQ=255)                                                   gcgcTTACCGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGAt                                                                                                                                     >  2:347283/1‑111 (MQ=255)                                                   gcgcTTACCGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGAt                                                                                                                                     <  1:347283/111‑1 (MQ=255)                                                    cgcTTACCGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTAc                                                                                             >  7:115396/1‑149 (MQ=255)                                                           cGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCa                                                                                      >  7:9146/1‑149 (MQ=255)                                                           cGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTAGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGAccc                                                                                      >  8:109775/1‑148 (MQ=255)                                                                ttCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGGATTGCTTGAGGTGGAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTCACTGACCACGGGc                                                                                 >  8:166408/1‑149 (MQ=255)                                                                     aCCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCAc                                                                               <  8:9146/146‑1 (MQ=255)                                                                         gggtGTAGTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCGATCGGGTTCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTccc                                                                        <  2:60112/146‑1 (MQ=255)                                                                          gTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTcccc                                                                       <  7:99539/149‑1 (MQ=255)                                                                          gTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTcccc                                                                       <  7:104530/149‑1 (MQ=255)                                                                          gTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTcccc                                                                       >  6:31571/1‑149 (MQ=255)                                                                                ttCCGCGGTCGCCATGCTG‑GCTGCCCTCGACCATCGGGATCATACAGGTGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTATGGCGAACCAGGCGATGAACTACCTGACAACGGACACCCCTCACCCTCGGc                                                                 >  2:282823/1‑149 (MQ=255)                                                                                  ccGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCt                                                                <  5:31571/148‑1 (MQ=255)                                                                                   cgcgGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTgg                                                              >  7:286609/1‑149 (MQ=255)                                                                                   cgcgGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTgg                                                              <  1:231494/149‑1 (MQ=255)                                                                                   cgcgGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTgg                                                              >  5:149013/1‑149 (MQ=255)                                                                                   cgcgGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTgg                                                              <  2:29934/149‑1 (MQ=255)                                                                                   cgcgGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCA‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTgg                                                              >  1:310861/1‑149 (MQ=255)                                                                                        TCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTGGGTAAt                                                         >  2:94192‑M1/1‑149 (MQ=255)                                                                                         CGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTGGGTAATg                                                        <  7:326233‑M1/149‑1 (MQ=255)                                                                                          GCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTGGGTAATGc                                                       >  8:286609‑M1/1‑149 (MQ=255)                                                                                           gacatgctggccgacccctgtctgatcccgatgggcgagggcagccagcatggcgacATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTGGGTAATgc                                                       >  7:70949‑M2/58‑149 (MQ=255)                                                                                            cATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTAc                                                                                             <  6:136370/109‑1 (MQ=255)                                                                                            cATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTAc                                                                                             >  5:136370/1‑109 (MQ=255)                                                                                                  g‑gctgCCCTCGCCCATCGGGATCAGACAGGCGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTGGGTAATGCGCATCCt                                                >  1:33417/1‑148 (MQ=255)                                                                                                    gctgCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGAAAGTTGCCATGTCTGGCGACCCAGGCCATGAACTACATCCCCACGGGCCCCCAACCCCGTAGCCTGGGTAATccgaaacaa                                                >  1:286005/1‑142 (MQ=255)                                                                                                    gccgacccctgtctgatcccgatgggcgagggcagccagcatggcgacATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTGGGTAATGCGCATCCTaa                                              <  4:326776‑M2/101‑1 (MQ=255)                                                                                                    gccgacccctgtctgatcccgatgggcgagggcagccagcatggcgacATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTGGGTAATGCGCATCCTaa                                              >  3:326776‑M2/49‑149 (MQ=255)                                                                                                     ctgCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTGGGTAATGCGCATCCTaa                                              >  6:223211/1‑148 (MQ=255)                                                                                                        cccTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTGGGTAATGCGCATCCTAata                                            <  6:149013/147‑1 (MQ=255)                                                                                                             gCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTGGGTAATGCGCATCCTAATATAGTccc                                     <  5:223211/149‑1 (MQ=255)                                                                                                                  tCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTGGGTAATGCGCATCCTAATATAGTCCCTTAcc                                <  3:128036/149‑1 (MQ=255)                                                                                                                               ggggTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTGGGTAATGCGCATCCTAATATAGTCCCTTACCAGGACTTTCCGAc                   <  8:115396/149‑1 (MQ=255)                                                                                                                                 ggTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTGGGTAATGTGCATCCTAATATAGTCCCTTACCAGGACTTTCCGACgg                 >  4:329075/1‑149 (MQ=255)                                                                                                                                       ccAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTGGGTAAt                                                         <  6:295647/103‑1 (MQ=255)                                                                                                                                          gCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAAGCAGGCGATGAACTACCTGACCACGGGCACCCCTCCGCGTCGGCTGGGTAATGCGCATCCTAATATAGTCCCTTACCAGGACTTTCCGACGGCAGATGGCg        <  2:286005/149‑1 (MQ=255)                                                                                                                                                 gacATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACTGGCACCGCTCCCCGTCGGCTGGGTAATGGGCATCCTAATATAGTCCCTTACCAGGACTTTCCGACGGCAGATGGCGATTTCa  <  1:282823‑M2/145‑1 (MQ=255)                                                                                                                                                 gacATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTGGGTAATGCGCATCCTAATATAGTCCCTTACCAGGACTTTCCGACGGCAGATGGCGATTTCa  <  8:326233‑M2/145‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  CCGGCCGTCCGGAGGGTGAAGAAGGCGCAGGGCCGGTCAAGGTGGGTGTGGCGCTTACCGATATTCTGACCGGGTTGTATTCCGCGGTCGCCATGCTG‑GCTGCCCTCGCCCATCGGGATCAGACAGGGGTCGGCCAGCATGTCGACATGGCATTGCTTGATGTGCAGGTGGCC‑TGTCTGGCGAACCAGGCGATGAACTACCTGACCACGGGCACCCCTCCCCGTCGGCTGGGTAATGCGCATCCTAATATAGTCCCTTACCAGGACTTTCCGACGGCAGATGGCGATTTCA  >  NC_002947/170074‑170364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.