New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 209901	NA (NA)	7 (0.130)	7/242	NT	88.1%	coding (15407/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 209956	1 (0.020)					coding (15462/26049 nt)	PP_0168	putative surface adhesion protein

ACGACCCTGTCGTGATGTCGATCGCAACCGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACA  >  NC_002947/209808‑210104                                                                                                                                                     |                                                                                                                                                     aCGACCCTGTCGTGATGTCGATCGCAACCGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACC                                                                                                                                                      >  2:138‑M2/1‑149 (MQ=255) aCGACCCTGTCGTGATGTCGATCGCAACCGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACC                                                                                                                                                      >  3:135981‑M2/1‑149 (MQ=255)                                                                                          aCGTCGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgacatccgcgccctcaacggttgcgatc                                                                           <  3:140898‑M2/135‑76 (MQ=255)                                                                                          aCGTCGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgacatccgcgccctcaacggttgcgatc                                                                           >  4:140898‑M2/1‑60 (MQ=255)                                                                                               ggTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccggcatccgcgccctcaacggttgcgatcgacatcacgacagggtcgt                                                        <  1:296138‑M2/149‑95 (MQ=255)                                                                                                gTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgacatccgcgccctcaacggttgcgatcgacatcacgacagggtcgt                                                        <  6:174194‑M2/148‑95 (MQ=255)                                                                                                    ccGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgacatccgcgccctcaacggtt                                                                                 <  1:340640‑M2/119‑70 (MQ=255)                                                                                                    ccGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgacatccgcgccctcaacggtt                                                                                 >  2:340640‑M2/1‑50 (MQ=255)                                                                                                                         gCAACGAAGGCGACTTGGTCAAGGTCACCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgacatccgcgccctcaacggttgcgatcgacatcacgacagggtcgttagcgccgacgtagacgttgtccgga                              >  5:174194‑M2/1‑29 (MQ=255)                                                                                                                               aaGGCGACTTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCt                        <  4:97322/149‑1 (MQ=11)                                                                                                                                                gTCACCgacgtgctgaccggcgtcttgtccagcgtaagctgttcgaacttgccgacatccgcgccctcaacggttgcgatcgacatcacgacagggtcgttagcgccgacgtagacgttgtccggagcagtcacggtggcagtgcccac       <  5:36888‑M2/149‑144 (MQ=255)                                                                                                                                                     cgacgtgctgaccggcgtcttgtccagcgtaagctgttctcacttgccgacatccgcgccctcaacggttgcgatcgacatcacgacagggtcgttagcgccgacgtagacgttgtccggagcagtcacggtggcagtgcccacggtgc  <  7:257802‑M2/149‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     ACGACCCTGTCGTGATGTCGATCGCAACCGTTGAGGGCGCGGATGTCGGCAAGTTCGAACAGCTTACGCTGGACAAGACGCCGGTCAGCACGTCGGTGACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACA  >  NC_002947/209808‑210104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.