New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2117966 =	41 (0.740)	3 (0.060)	3/244	NT	6.9%	coding (1642/2466 nt)	PP_1884	hypothetical protein
	?	NC_002947	2118004 =	42 (0.800)					coding (1680/2466 nt)	PP_1884	hypothetical protein

CAGGCGAGCGGCACATGCCCCGCGACATTGCCTGTTTTGGCGGCGTCGCTCCACAGCTGACCACGTTCGCCGTCACCCCCCTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATCGAAGGTGAATTTACCAGGGTGCGTGTCACTGCCACTGTTCCAGGCTC  >  NC_002947/2117859‑2118150                                                                                                                                                  |                                                                                                                                                   cagcttcgatgcccgtggcgcctggcgccagatacaggtcatttgtgtgttggtcgaaatggcccgggtcatccgaggagccctctaccgactcggccgaccaggttACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAAc                                                                                                                                                  >  8:151411‑M1/108‑148 (MQ=255)     ttcgatgcccgtggccccgggcgccagatacaggccatgggtgtgttggtcgaaatggcccgggtcatccgaggagccctctaccgactcggccgaccaggttACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCaacgtaaactag                                                                                                                                              <  1:126369‑M1/45‑6 (MQ=255)     ttcgaagcccgtggccccgggcgccagatacaggccatgggtgtgttggtcgaaatggcccgggtcatccgaggagccctctaccgactcggccgaccaggttACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAAcc                                                                                                                                                 >  2:126369‑M1/104‑145 (MQ=255)          ggCACATGCCCCGCGACATTGCCTGTTTTGGCGGCGTCGCTCCACAGCTGACCACGTTCGCCGTCACCCCCCTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGcc                                                                                                                                        <  2:77134/149‑1 (MQ=255)              caTGCCCCGCGACATTGCCTGTTTTGGCGGCGTCGCTCCACAGCTGACCACGTTCGCCGTCACCCCCCTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGt                                                                                                                                    <  7:209772/149‑1 (MQ=255)                 gCCCCGCGACATTGCCTGTTTTGGCGGCGTCGCTCCACAGCTGACCACGTTCGCCGTCACCCCCCTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGGCGGCCGAGTCgg                                                                                                                                 >  8:120392/1‑149 (MQ=255)                      gcgACATTGCCTGTTTTGGCGGCGTCGCTCCACAGCTGACCACGTTCGCAGTCCCCCCCCTGGAAAAAATCGTGCCCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGttgcg                                                                                                                            >  1:83575/1‑145 (MQ=255)                               ccTGTTTTGGCGGCGTCGCTCCACAGCTGACCACGTTCGCCGTCACCCCCCTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGctcctc                                                                                                                    <  5:234007/148‑1 (MQ=255)                                cTGTTTTGGCGGCGTCGCTCCACAGCTGACCACGTTCGCCGTCACCCCCCTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCga                                                                                                                  >  3:307387/1‑148 (MQ=255)                                         cggagTCGCTCCACAGCTGACCAGGTTCGCCGTCACCCCCCTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCgg                                                                                                         <  5:232186/149‑1 (MQ=255)                                                    cacaGCTGACCACGTTCGCCGTCACCCCCCTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGAc                                                                                              >  8:277604/1‑149 (MQ=255)                                                     acaGCTGACCACGTTCGCCGTCACCCCCCTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGAcc                                                                                             <  1:150443/149‑1 (MQ=255)                                                        gCTGACCACGTTCGCCGTCACCCCCCTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAac                                                                                          <  4:224904/149‑1 (MQ=255)                                                          tGACCACGTTCGCCGTCACCCCCCTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGAc                                                                                              >  2:210219/1‑143 (MQ=255)                                                          tGACCACGTTCGCCGTCACCCCCCTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGAc                                                                                              <  1:210219/143‑1 (MQ=255)                                                            aCCACGTTCGCCGTCACCCCCCTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTagag                                                                                                                            <  3:135520/111‑1 (MQ=255)                                                            aCCACGTTCGCCGTCACCCCCCTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTagag                                                                                                                            >  4:135520/1‑111 (MQ=255)                                                              cACGTTCGCCGTCACCCCCCTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACAcc                                                                                     >  8:192692/1‑148 (MQ=255)                                                                     gCCGTCACCCCCCTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGAt                                                                                                                >  3:6558/1‑114 (MQ=255)                                                                     gCCGTCACCCCCCTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGAt                                                                                                                <  4:6558/114‑1 (MQ=255)                                                                       cGTCACCCCCCTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTg                                                                            >  2:100200/1‑148 (MQ=255)                                                                          cACCCCCCTGGAAAAAATCGTGACCCTCGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATc                                                                        >  1:10614/1‑149 (MQ=255)                                                                            ccccccTCGAAAAAATCGTCACCCACGGCAGCCCGTTCCAGCTTGCCACCGTCCCGGCGCACGCCAACGTAACCGGCGCGGCCCAGTCGGTAGAGGGCTCCTCGGAAGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTg                                                                      <  4:22602/149‑1 (MQ=255)                                                                             cccccTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTgg                                                                     >  5:3581/1‑149 (MQ=255)                                                                                    gAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCgg                                                              >  4:116294/1‑149 (MQ=255)                                                                                      aaaaaTCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCgggg                                                            <  1:100200/149‑1 (MQ=255)                                                                                             gTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACggg                                                     <  7:277604/149‑1 (MQ=255)                                                                                                  ccACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATc                                                 >  4:213202/1‑148 (MQ=255)                                                                                                  ccACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATc                                                 >  7:129140/1‑148 (MQ=255)                                                                                                   cACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCCAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATCg                                                >  8:118809/1‑148 (MQ=255)                                                                                                     ctagtttacgttggcttgcgccgggacggtggcaagctgcaacgtAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATCGaa                                              <  1:126369‑M2/103‑1 (MQ=255)                                                                                                      ggCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTC‑GATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATCGAAGGt                                           <  4:307387/149‑1 (MQ=255)                                                                                                        ggttacgttggcttgcgccgggacggtggcaagctgcaacgtAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCTTCGaa                                              >  2:126369‑M2/43‑145 (MQ=255)                                                                                                         gttacgttggcttgcgccgggacggtggcaagctgcaacgtAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACAAATGACCTGTATCTGGCGCCAGGCGCCACGGGCATCGAAGCTg                                          >  8:151411‑M2/42‑148 (MQ=255)                                                                                                         agcaCGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATCGAAGGTGa                                         <  3:213202/149‑1 (MQ=255)                                                                                                           caCGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATCGAAGGGGAAt                                       >  8:331830/1‑149 (MQ=255)                                                                                                            ACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATCGAAGGTGAAtt                                      <  3:186636‑M1/149‑1 (MQ=255)                                                                                                             CGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATAGCCTGTATCTGGCGCCCGTGGCCACGGGCATCGAAGGTGAAttt                                     >  7:120392‑M1/1‑149 (MQ=255)                                                                                                              GTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATg                                                                                 <  6:74093‑M1/104‑1 (MQ=255)                                                                                                              GTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATg                                                                                 >  5:74093‑M1/1‑104 (MQ=255)                                                                                                               TTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCCCGGGCATCGAAGGTGAATTTAc                                   <  5:366556‑M1/149‑1 (MQ=255)                                                                                                                   aGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATCGAAGGTGAATTTACCAgg                               <  3:116294/149‑1 (MQ=255)                                                                                                                         ccACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATCGAAGGTGAATTTACCAGGGTGCgt                         <  8:129140/149‑1 (MQ=255)                                                                                                                         ccACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCCAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATCGAAGGTGAATTTACCAGGGTGCgt                         <  7:118809/149‑1 (MQ=255)                                                                                                                           aCCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATCGAAGGTGAAt                                       >  5:112427/1‑133 (MQ=255)                                                                                                                           aCCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATCGAAGGTGAAt                                       <  6:112427/133‑1 (MQ=255)                                                                                                                           aCCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATCGAAGGTGAATTTACCAGGGTGCgtgt                       <  6:3581/149‑1 (MQ=255)                                                                                                                                 ccGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGTGCCATTTCGACCAACACACCCATGGCCTGTATCTGTCGCCCGGGGCCCCGGGCATCGAAGGTGAATTTACCAGGGTGCGTGTCACTGc                 >  6:92590/1‑149 (MQ=255)                                                                                                                                 ccGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGc                                                                               >  4:221761/1‑87 (MQ=255)                                                                                                                                 ccGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGc                                                                               <  3:221761/87‑1 (MQ=255)                                                                                                                                  cGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATCGAAGGTGAATTTACCAGGGTGCGTGTCACTGcc                >  6:358754/1‑149 (MQ=255)                                                                                                                                  cGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATCGAAGGTGAATTTACCAGGGTGCGTGTCACTGc                 >  4:330011/1‑148 (MQ=255)                                                                                                                                      gcAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATCGAAGGTGAATTTACCAGGGTGCGTGTCACTGCCACTg            >  8:221266/1‑149 (MQ=255)                                                                                                                                                gtAACCTGGTCTGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGTCGCCCGGGGCCACGGGCATCGAAGGTGAAGTTACGAGGGTGCGTGTCACTGCCACTGTTCCAGGCt   >  6:255600‑M2/3‑148 (MQ=255)                                                                                                                                                gtAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATCGAAGGTGAATTTACCAGGGTGCGTGTCACTGCCACTGTTCCAGGCTc  <  7:151411‑M2/147‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   CAGGCGAGCGGCACATGCCCCGCGACATTGCCTGTTTTGGCGGCGTCGCTCCACAGCTGACCACGTTCGCCGTCACCCCCCTGGAAAAAATCGTGACCCACGGCAGCACGTTGCAGCTTGCCACCGTCCCGGCGCAAGCCAACGTAACCTGGTCGGCCGAGTCGGTAGAGGGCTCCTCGGATGACCCGGGCCATTTCGACCAACACACCCATGGCCTGTATCTGGCGCCCGGGGCCACGGGCATCGAAGGTGAATTTACCAGGGTGCGTGTCACTGCCACTGTTCCAGGCTC  >  NC_002947/2117859‑2118150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.