New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2959898 =	50 (0.900)	5 (0.090)	5/244	NT	10.1%	coding (1294/2316 nt)	PP_2590	ferric siderophore receptor
	?	NC_002947	2959939 =	41 (0.780)					coding (1253/2316 nt)	PP_2590	ferric siderophore receptor

CAGGGTTGTAGATATTGGTCGTCCAGTTCGAGCCGGCGGCGCGGCGGCCGAAGTCCTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGATAGTCCGTCTTGCTGGTGCCGACCGCGCCATAGGCCAGC  >  NC_002947/2959793‑2960073                                                                                                                                                    |                                                                                                                                       gacggactatcgctacagcggcgcactcacagcaacggtgaacaacagcgccggtgatttcaccaccgcgatgggccagttgcagatggagatccacaagacttcTGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGaa                                                                                                                                      >  2:136689‑M1/106‑149 (MQ=255)  aGGGTTGTAGATATTGGTCGTCCAGTTCGAGCCGGCGGCGCGGCGGCCGAAGTCCTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAg                                                                                                                                        >  6:243191/1‑146 (MQ=255)  aGGGTTGTAGATATTGGTCGTCCAGTTCGAGCCGGCGGCGCGGCGGCCGAAGTCCTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGaa                                                                                                                                      <  5:243191/148‑1 (MQ=255)         tAGATATTGGTCGTCCAGTTCGAGCCGGCGGCGCGGCGGCCGAAGTCCTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTtgt                                                                                                                               >  4:240958/1‑148 (MQ=255)         tAGATATTGGTCGTCCAGTTCGAGCCGGCGGCGCGGCGGCCGAAGTCCTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTtgt                                                                                                                               <  3:240958/148‑1 (MQ=255)              atTGGTCGTCCAGTTCGAGCCGGCGGCGCGGCGGCCGAAGTCCTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGAtct                                                                                                                         >  2:124845/1‑149 (MQ=255)               ttGGTCGTCCAGTTCGAGCCGGCGGCGCGGCGGCCGAAGTCCTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGAtctc                                                                                                                        >  1:320681/1‑149 (MQ=255)                   tcgtcCAGTTCGAGCCGGCGGCGCGGCGGCCGAAGTCCTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATc                                                                                                                    >  1:138196/1‑149 (MQ=255)                     gtcCAGTTCGAGCCGGCGGCGCGGCGGCCGAAGTCCTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTg                                                                                                                  >  4:214678/1‑149 (MQ=255)                      tcCAGTTCGAGCCGGCGGCGCGGCGGCCGAAGTCCTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTg                                                                                                                  >  6:267644/1‑148 (MQ=255)                        cAGTTCGAGCCGGCCGCGCGGCGGCCGAAGTCCTTTTGCGTGTCGATCTACTGGGTGGCGTTGACCGACCATTGGTGGTTCATGCCGAAGGTGTCGAAAT‑GGACACGCAGCCCCACCTCGGCAGAAGTCTAGTGGATATCCAACTGCaa                                                                                                               >  6:322991/1‑149 (MQ=255)                             cGAGCCGGCGGCGCGGCGGCCGAAGTCCTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTgg                                                                                                           <  2:320681/148‑1 (MQ=255)                                     cggcgcggcgGCCGAAGTCCTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGTCCCATcgcg                                                                                                  <  5:322991/149‑1 (MQ=255)                                     cggcgcggcgGCCGAAGTCCTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATcgcg                                                                                                  <  1:209127/149‑1 (MQ=255)                                         gcggcgGCCGAAGTCCTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCAt                                                                                                                     <  7:317542/126‑1 (MQ=255)                                         gcggcgGCCGAAGTCCTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCAt                                                                                                                     >  8:317542/1‑126 (MQ=255)                                         gcggcgGCCGAAGTCCTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCggtgg                                                                                              <  1:124845/149‑1 (MQ=255)                                                 cGAAGTCCTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCa                                                                                      >  3:7884/1‑149 (MQ=255)                                                 cGAAGTCCTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCa                                                                                      >  5:176252/1‑149 (MQ=255)                                                        cTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGgcgc                                                                               <  8:26389/149‑1 (MQ=255)                                                         ttttGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGgtggtg                                                                                            >  5:24898/1‑135 (MQ=255)                                                         ttttGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGgtggtg                                                                                            <  6:24898/135‑1 (MQ=255)                                                             gCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCtgttg                                                                          >  3:12922/1‑149 (MQ=255)                                                               gtgtCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTgttgtt                                                                        <  3:86330/149‑1 (MQ=255)                                                                  tCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGTCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCa                                                                      <  3:214678/148‑1 (MQ=255)                                                                       gTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTgg                                                                                                           >  6:185867/1‑106 (MQ=255)                                                                       gTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTgg                                                                                                           <  5:185867/106‑1 (MQ=255)                                                                        tACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTg                                                                <  5:267644/148‑1 (MQ=255)                                                                             ggTGGCGTTGCCCGACCATTGGTGGATGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCAATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCtgt                                                            >  8:91013/1‑147 (MQ=255)                                                                               tGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGt                                                        >  1:163496/1‑149 (MQ=255)                                                                                   gTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAATGGGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTgcg                                                     >  1:249702/1‑149 (MQ=255)                                                                                   gTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTgcgc                                                    >  6:279247/1‑149 (MQ=255)                                                                                              aTTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGa                                         <  6:176252/149‑1 (MQ=255)                                                                                              aTTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGa                                         <  2:138196/149‑1 (MQ=255)                                                                                                        ttctgccgaggtggggctgcgtggccatttcgacaccttcggcaGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGATAGTCCGTc                                >  2:136689‑M2/45‑149 (MQ=255)                                                                                                        gATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGATAGTCCGTc                                <  2:249702/148‑1 (MQ=255)                                                                                                         aTGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGATAGTCCGTCt                               <  3:36283/148‑1 (MQ=255)                                                                                                            gccgaggtggggctgcgtggccatttcgacaccttcggcaGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGATAGTCCGTCTTGc                            >  1:185993‑M2/41‑149 (MQ=255)                                                                                                             ccgaggtggggctgcgtggccatttcgacaccttcggcaGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGATAGTCCGTCTTg                             <  4:99405‑M2/108‑1 (MQ=255)                                                                                                             ccgaggtggggctgcgtggccatttcgacaccttcggcaGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGATAGTCCGTCTTg                             >  3:99405‑M2/40‑147 (MQ=255)                                                                                                              GAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGATAGTCCGTCTTGCTgg                         >  4:12922‑M1/1‑149 (MQ=255)                                                                                                                   tgtCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGATAGTCCGTCTTGCTGGTGCCg                    <  4:7884/149‑1 (MQ=255)                                                                                                                    gtCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGATAGTCCGTCTTGCTGGTGCCGa                   >  4:329948/1‑149 (MQ=255)                                                                                                                               gccatttcgacaccttcggcaGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGATAGTCCGTCTTGCTGGTGCCGACCGCGCCATa         <  1:136689‑M2/128‑1 (MQ=255)                                                                                                                                cACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGATAGTCCGTCTTGCTGGTGCCGACCGCGCCATAg        >  4:138049/1‑149 (MQ=255)                                                                                                                                   gCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGATAGTCCGTCTTGCTGGTGCCGACCgcgc             >  2:64259/1‑141 (MQ=255)                                                                                                                                   gCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGATAGTCCGTCTTGCTGGTGCCGACCgcgc             <  1:64259/141‑1 (MQ=255)                                                                                                                                    cAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGATAGTCCGTCTTGCTGGTGCCGACCGCGCCATAGGCCa    <  7:91013/149‑1 (MQ=255)                                                                                                                                    cAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGATAGTCCGTCTTGCTGGTGCCGACCGCGCCATAGGCCa    <  5:279247/149‑1 (MQ=255)                                                                                                                                      gCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGATAGTCCGTCTTGCTGGTGCCGACCGCGCCATAGGCCAGc  <  3:329948/149‑1 (MQ=255)                                                                                                                                         ccACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGa                                         >  6:363284/1‑107 (MQ=255)                                                                                                                                         ccACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGa                                         <  5:363284/107‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                       CAGGGTTGTAGATATTGGTCGTCCAGTTCGAGCCGGCGGCGCGGCGGCCGAAGTCCTTTTGCGTGTCGCTGTACTGGGTGGCGTTGACCGACCATTGGTGGTTGATGCCGAAGGTGTCGAAAT‑GGCCACGCAGCCCCACCTCGGCAGAAGTCTTGTGGATCTCCATCTGCAACTGGCCCATCGCGGTGGTGAAATCACCGGCGCTGTTGTTCACCGTTGCTGTGAGTGCGCCGCTGTAGCGATAGTCCGTCTTGCTGGTGCCGACCGCGCCATAGGCCAGC  >  NC_002947/2959793‑2960073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.