New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3664357 =	42 (0.760)	3 (0.060)	3/242	NT	6.8%	coding (247/966 nt)	PP_3228	aliphatic sulfonate‑binding protein
	?	NC_002947	3664409 =	42 (0.800)					coding (299/966 nt)	PP_3228	aliphatic sulfonate‑binding protein

CCTACGACATCCGCTGGGCCGAGTTCCCTGCCGCCGCGCCGCTGGCCGAGGCGCTCAACGCTGGGGCGATCGATGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGACCGGGCGAGGGTCGATCGGGCACCACCTGGCGCTCAAGGCGCTGGCCCAGGCAGGGCT  >  NC_002947/3664262‑3664556                                                                                                                                                    |                                                                                                                                                      cccggtcgcgatgcgcttgcccttgagttcggccgcactgcgcagcggcgcctccggccgcaccagcaacgccgtgccataagggtcggacttgtCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGa                                                                                                                                                       <  7:333080‑M1/53‑1 (MQ=255)   cggtcgcgatgcgcttgcccttgagttcggccgcactgcgcagcggcgcctccggccgcaccagcaacgccgtgccataagggtcggacttgtCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACaa                                                                                                                                                    >  8:232635‑M1/94‑149 (MQ=255)     gtcgcgatgcgcttgcccttgagttcggccgcactgcgcagcggcgcctccggccgcaccagcaacgccgtgccataagggtctgacttgtCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGt                                                                                                                                                  >  8:333080‑M1/92‑149 (MQ=255)      gACATCCGCTGGGCCGAGTTCCCTGCCGCCGCGCCGCTGGCCGAGGCTCTCAACGCTGGGGCGATCGATGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTc                                                                                                                                                 <  3:334775/149‑1 (MQ=255)                gggCCGAGTTCCCTGCCGCCGCGCCGCTGGCCGAGGCGCTCAACGCTGGGGCGATCGATGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAt                                                                                                                                       <  8:46451/149‑1 (MQ=255)                           ccTGCCGCCGCGCCGCTGGCCGAGGCGCTCAACGCTGGGGCGATCGATGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGAc                                                                                                                                             <  8:166197/132‑1 (MQ=255)                           ccTGCCGCCGCGCCGCTGGCCGAGGCGCTCAACGCTGGGGCGATCGATGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGAc                                                                                                                                             >  7:166197/1‑132 (MQ=255)                               ccgccgCGCCGCTGGCCGAGGCGCTCAACGCTGGGGCGATCGATGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTg                                                                                                                       >  2:198432/1‑149 (MQ=255)                               ccgccgCGCCGCTGGCCGAGGCGCTCAACGCTGGGGCGATCGATGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGACCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGc                                                                                                                         <  1:317601/147‑1 (MQ=255)                                 gccgcgccgcTGGCCGAGGCGCTCAACGCTGGGGCGATCGATGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGCCCCTTAT‑GGCACGGCGTTGCTGGt                                                                                                                     >  6:44992/1‑149 (MQ=255)                                         gcTGGCCGAGGCGCTCAACGCTGGGGCGATCGATGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCgg                                                                                                             <  3:149838/149‑1 (MQ=255)                                           tGGCCGAGGCGCTCAACGCTGGGGCGATCGATGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTg                                                                                                                       <  5:70983/137‑1 (MQ=255)                                           tGGCCGAGGCGCTCAACGCTGGGGCGATCGATGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTg                                                                                                                       >  6:70983/1‑137 (MQ=255)                                             gCCGAGGCGCTCAACGCTGGGGCGATCGATGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGgc                                                                                                         >  7:78664/1‑149 (MQ=255)                                             gCCGAGGCGCTCAACGCTGGGGCGATCGATCCCGGCATCATCGGCGATGCGCCACTGCTGTGCGTGCGGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAg                                                                                                           <  4:173437/147‑1 (MQ=255)                                               cGAGGCGCTCAACGCTGGGGCGATCGATGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGgcgc                                                                                                       >  8:320439/1‑149 (MQ=255)                                                           cGCTGGGGCGATCGATGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTg                                                                                          <  8:78664/149‑1 (MQ=255)                                                                gggCGATCGATGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGcc                                                                                     <  8:63332/149‑1 (MQ=255)                                                                 ggCGATCGATGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGcc                                                                                     >  2:191928/1‑148 (MQ=255)                                                                   cgatcgatGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGaa                                                                                  <  7:320439/149‑1 (MQ=255)                                                                     atcgatGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACt                                                                                >  6:89507/1‑149 (MQ=255)                                                                         atGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAg                                                                            >  1:205042/1‑149 (MQ=255)                                                                           gCCGGCATCAACGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAggg                                                                          >  6:193098/1‑149 (MQ=255)                                                                              ggCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGc                                                                                      >  8:221255/1‑134 (MQ=255)                                                                              ggCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGc                                                                                      <  7:221255/134‑1 (MQ=255)                                                                                cataatCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAgc                                                                     >  6:69716/1‑149 (MQ=255)                                                                                     tcGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGAACCGGTCAAGGCCATCGCAGTGGACAAGTAAGACCCTTAT‑GGCAAGGCGTTGCTGGTGCGGCAGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTAAAGGGCAAGCGCATc                                                                >  3:206651/1‑149 (MQ=255)                                                                                        gCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAgcg                                                                    <  1:355770/142‑1 (MQ=255)                                                                                        gCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAgcg                                                                    >  2:355770/1‑142 (MQ=255)                                                                                          acttgtccactgcgatggccttgaccggtgctccggaggccagcacgaacagcagtggACAAGTCAGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGAc                                                           >  8:333080‑M2/59‑149 (MQ=255)                                                                                            ttgtccactgcgatggccttgaccggtgctccggaggccagcacgaacagcagtggACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGACCg                                                         >  8:232635‑M2/57‑149 (MQ=255)                                                                                               tccactgcgatggccttgaccggtgctccggaggccagcacgaacagcagtggACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGACCggg                                                       <  7:333080‑M2/95‑1 (MQ=255)                                                                                               gcCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGt                                                                                                                     <  7:164554/87‑1 (MQ=255)                                                                                               gcCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGt                                                                                                                     >  8:164554/1‑87 (MQ=255)                                                                                               gcCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGACCGGGc                                                      >  6:347606/1‑149 (MQ=255)                                                                                                ccAGTGCGGTTCGTGCTGGCCTCCGGAGCGCCGGTCAAGGCCATGGCAGTGGAGAAGTCCGACGCGTAT‑GGCGCGGCGGTGGTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGGGCGGCGGTGCTCAGGGGCATGCGCATCGCGGCCGGGCg                                                     >  8:313139/1‑149 (MQ=255)                                                                                                    TGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGACCGGGCGAggg                                                 <  3:200935‑M1/149‑1 (MQ=255)                                                                                                             tGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGACCGGGCGAGGGTCGATCggg                                        <  8:328847/149‑1 (MQ=255)                                                                                                               cTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGACCGGGCGAGGGTCGATCGGGca                                      >  2:64336/1‑149 (MQ=255)                                                                                                                 ggCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTATGGGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGACCGGGCGAGGGTCGATCGGGcac                                     >  1:94147/1‑149 (MQ=255)                                                                                                                    cTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGAGAATCGCGCCCGGGCGAGGGTCGATCGGGCaccacc                                 >  2:85831/1‑149 (MQ=255)                                                                                                                     tCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGACCGGGCGAGGGTCGATCTGGCACCACCt                                >  4:34530/1‑149 (MQ=255)                                                                                                                           gCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGACCGGGCGAGGGTCGATCGGGCACCACCTGGCGCt                          <  7:313139/149‑1 (MQ=255)                                                                                                                              ccGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGACCGGGCGAGGGTCGATCGGGCACCACCTGGCGCTCaa                       <  2:94147/149‑1 (MQ=255)                                                                                                                               cGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGACCGGGCGAGGGTCGATCGGGCACCACCTGGCGCTCAAg                      >  6:58222/1‑149 (MQ=255)                                                                                                                                    aaGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGACCGGGCGAGGGTCGATCGGGCACCACCTGGCGCTCAAGGCGCt                 >  1:90956/1‑149 (MQ=255)                                                                                                                                      ggCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGACCGGGCGAGGGTCGATCGGGCACCACCTGGCGCTCAAGGCGCTgg               >  1:241481/1‑149 (MQ=255)                                                                                                                                       gCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGACCGGGCGAGGGTCGATCGGGCACCACCTGGCGCTCAAGGCGCTGGc              <  1:191928/149‑1 (MQ=255)                                                                                                                                       gCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGACCGGGCGAGGGTCGATCGGGCACCACCTGGCGCTCAAGGCGCTGGc              >  8:83078/1‑149 (MQ=255)                                                                                                                                               agtggACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGACCGGGCGAGGGTCGATCGGGCACCACCTGGCGCTCAAGGCGCTGGCCcaggcag      >  3:189266‑M2/6‑149 (MQ=255)                                                                                                                                                    aCAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCCGGCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGACCGGGCGAGGGTCGATCGGGCACCACCTGGCGCTCAAGGCGCTGGCCCAGGCAGGGCt  >  1:268460/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CCTACGACATCCGCTGGGCCGAGTTCCCTGCCGCCGCGCCGCTGGCCGAGGCGCTCAACGCTGGGGCGATCGATGCCGGCATCATCGGCGATGCGCCACTGCTGTTCGTGCTGGCCTCCGGAGCACCGGTCAAGGCCATCGCAGTGGACAAGTCCGACCCTTAT‑GGCACGGCGTTGCTGGTGCGGCCGGAGGCGCC‑GCTGCGCAGTGCGGCCGAACTCAAGGGCAAGCGCATCGCGACCGGGCGAGGGTCGATCGGGCACCACCTGGCGCTCAAGGCGCTGGCCCAGGCAGGGCT  >  NC_002947/3664262‑3664556

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.