New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5222931 =	NA (NA)	25 (0.800)	19/284	0.8	78.5%	intergenic (‑342/+37)	PP_4602/PP_4603	AraC family transcriptional regulator/transposase
	?	NC_002947	= 5389425	7 (0.220)					intergenic (+124/‑196)	dld2/PP_4738	D‑lactate dehydrogenase/hypothetical protein

CTTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAgag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5223077‑5222931 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGTGGGGATTGGCCAGCAGGACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGCGCTCCCCACCTATATCAACGCGTTAGAGGCTGCGTGGCCGGGTGACG  <  NC_002947/5389425‑5389277                                                                                                                                                                                                                                                                                                          CTTATGTTTAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAG                                                                                                                                                      <  5:55848/148‑1  TTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGCAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGGTGCATTTTGTTTGATTAGA                                                                                                                                                     >  1:127359/1‑148  TTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCATTTCTTTGCAAAGCCCCGAAACTGGGGTATCAACTGGTGGCCGCGTGAGGGGTTAGCAAACAATGGGTTGGCTTTTTTTTGGTGAGg                                                                                                                                                     >  1:8309/1‑147  TTAGGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGA                                                                                                                                                     <  7:123294/148‑1    ATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTTGTTCGCAAAGCCCGGCAACTGGGGGATCAACTGGGGGGCGCGTGAGTGCTTAGAAAACAATGGGTTGGATTTTGTTTTATGAGcga                                                                                                                                                   >  3:145034/1‑145     TGTTGAACAAGGTCTTTAGGAGTTCGAAACCAGAAGCAAAGAGCTGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGA                                                                                                                                                     <  6:39903/145‑1     TGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAG                                                                                                                                                    <  7:114355/146‑1       TTGAACAAGGTCTTGAGTAGTGCGAAACCAGAAGCAAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGG                                                                                                                                                 <  7:159331/147‑1        TGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGT                                                                                                                                               <  4:24560/148‑1           ACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTAGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGGCGCGTGCGTGGTTAGAACACAATGGGTTGGATTTTGTTTGATGAGAGCGGGTTTA                                                                                                                                            >  3:107145/1‑148                    TGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGC                                                                                                                                       <  7:108527/144‑1                      AGGAGTTCTAACCCAGAAGCCAAGACCGGCAGGTCCTGGCTTTGCTTCGCAAAGCCGGGAAACTTGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAA                                                                                                                                    <  8:5376/145‑1                      AGGAGTTCGAAACCATAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTTGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTTATGAGAGCGGGTTTACCCGCGAATG                                                                                                                                  <  6:82976/147‑1                          GTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATGCGGTG                                                                                                                             <  8:123944/148‑1                                     GAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGT                                                                                                                  <  7:37560/148‑1                                                CGGCAGGGCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGT                                                                                                       <  7:145821/148‑1                                                  GCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGTGG                                                                                                     <  6:85003/148‑1                                                    AGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGGGGCCGCTTGAGTGCTTAGAAAACAATGGGTGGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGTGGGG                                                                                                   <  5:15223/148‑1                                                           GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGTGGGGATTGGCC                                                                                            <  1:51035/148‑1                                                                   TTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGTGGGGATTGGCCAGCAGGAC                                                                                    >  4:25971/1‑148                                                                                     TGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGTGGGGATTGGCCAGCAGGACCGGCCTCTTCGCGGGTAA                                                                  >  8:53119/1‑148                                                                                     TGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGTGGGGATTGGCCAGCAGGACCGGCCTCTTCGCGGGTAA                                                                  >  1:26358/1‑148                                                                                       GGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGTGGGGATTGGCCAGCAGGACCGGCCTCTTCGCGGGTAAAC                                                                >  1:54134/1‑148                                                                                        GGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGTGGGGATTGGCCAGCAGGACCGGCCTCTTCGCGGGTAAACC                                                               >  5:127225/1‑148                                                                                                        CGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGTGGGGATTGGCCAGCAGGACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGCGC                                               >  2:176297/1‑148                                                                                                               GTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGTGGGGATTGGCCAGCAGGACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGCGCTCCCCA                                         <  7:53119/147‑1                                                                                                                   TTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGTGGGGATTGGCCAGCAGGACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGCGCTC                                             >  7:156462/1‑139                                                                                                                    TAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGTGGGGATTGGCCAGCAGGACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGCGCTCC                                            <  8:156462/139‑1                                                                                                                      GAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGTGGGGATTGGCCAGCAGGACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGCGCTCCCCACCTATAT                                  <  4:14502/147‑1                                                                                                                         AACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGTGGGGATTGGCCAGCAGGACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGCGCTCCCCACCTATATCAAC                              <  5:110039/148‑1                                                                                                                               GGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGTGGGGATTGGCCAGCAGGACCGGCCTCTTTGCGGGTAAACCCGCTCCTACGCAGCGCTCCCCACCTATATCAACGCGTTA                        <  1:80288/148‑1                                                                                                                                   TGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGTGGGGATTGGCCAGCAGGACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGCGCTCCCCACCTATATCAACGCGTTAGAGG                    <  6:127225/148‑1                                                                                                                                                     AGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGTGGGGATTGGCCAGCAGGACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGCGCTCCCCACCTATATCAACGCGTTAGAGGCTGCGTGGCCGGGTGACG  >  7:370/1‑148                                                                                                                                                                                                                                                                                                          CTTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAgag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5223077‑5222931 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGCGGGTTTACCCGCGAATGCGGTGGTGGCTGCGGTGGACAGTGGGTGGGGATTGGCCAGCAGGACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGCGCTCCCCACCTATATCAACGCGTTAGAGGCTGCGTGGCCGGGTGACG  <  NC_002947/5389425‑5389277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.