New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5222931 =	NA (NA)	25 (0.800)	19/284	0.8	78.5%	intergenic (‑342/+37)	PP_4602/PP_4603	AraC family transcriptional regulator/transposase
	?	NC_002947	= 5389425	7 (0.220)					intergenic (+124/‑196)	dld2/PP_4738	D‑lactate dehydrogenase/hypothetical protein

CAGCGCAGCCCGGAAGGGCTGGGTGATCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTC  >  NC_002947/5222901‑5223048                               |                                                                                                                      ccgggccgCCCGGTATGGCTGGGGGATCTATCATCAAACAAAATGCCACCCTTTGTTTTTACCGCCATCATGCGGCCACCAGTTGATCCCCCGGTGGCGGGGATTGCCGACCCAAACCCCGGACCTGCCGGTCTTGGCTTCTGGTTTc  <  8:39490/141‑1 (MQ=0)                               |                                                                                                                      CAGCGCAGCCCGGAAGGGCTGGGTGATCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTC  >  NC_002947/5222901‑5223048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.