| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5222931 = | NA (NA) | 25 (0.800) | 19/284 | 0.8 | 78.5% | intergenic (‑342/+37) | PP_4602/PP_4603 | AraC family transcriptional regulator/transposase |
| ? | NC_002947 | = 5389425 | 7 (0.220) | intergenic (+124/‑196) | dld2/PP_4738 | D‑lactate dehydrogenase/hypothetical protein | |||||
GTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACGCAGATTGGTGGTGCCCACACATCGGTGGGTGTACACAGCCCGCCGTATGCGCGGTAAACCCGCGAACACCGGCAACGCCGGTGCCATCCCTACTTCAATATCGCCCCGCCACCATCCCGATGGAACCCCCGCCAATCCCCCG > NC_002947/5389278‑5389572 | cacacgaaccctaacaaagcaaaaggcggctggccctaccgggccaaccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctgggtgatctc > 6:87304‑M1/146‑148 (MQ=255) acacgaaccctaacaaagcaaaaggcggctggccctaccgggccaaccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctgggtgatctc < 2:50376‑M1/3‑1 (MQ=255) acacgaaccctaacaaagcaaaaggcggctggccctaccgggccaaccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctgggtgatCTcc > 1:10215‑M1/145‑148 (MQ=255) acacgaaccctaacaaagcaaaaggcggctggccctaccgggccaaccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctgggtgatCTcc > 5:131298‑M1/145‑148 (MQ=255) gaaccctaacaaagcaaaaggcggctggccctaccgggccaaccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctgggtgatCTCCTACg < 3:60504‑M1/8‑1 (MQ=255) ccctaacaaagcaaaaggcggctggccctaccgggccaaccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctgggtgatCtcctaaggg < 6:91933‑M1/10‑5 (MQ=255) aacaaagcaaaaggcggctggccctaccgggccaaccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctgggtgatCTCCTACGCAGATtg < 4:125234‑M1/15‑1 (MQ=255) cAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACGCAGATtggt < 2:86058/148‑1 (MQ=255) aaagcaaaaggcggctggccctaccgggccaaccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctgggtgatCTCCTACGCAGATtggtg < 5:170294‑M1/18‑1 (MQ=255) gCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACGCAGATtggtgg < 1:152876/148‑1 (MQ=255) ccTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCtcatcaaacaaaatgca < 6:127225‑M2/148‑18 (MQ=255) tAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCAAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCtcatcaaacaaaatgcaaccc < 1:80288‑M2/148‑22 (MQ=255) aaggcggctggccctaccgggccaaccgccgtttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctgggtgatCTCCTACGCAGATTGGTGGTGCCca < 1:75857‑M1/25‑1 (MQ=255) gTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCtcatcaaacaaaatgcaacccattgtt < 5:110039‑M2/148‑28 (MQ=255) ggccctaccgggccaaccgccttttttttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctgggtgatCTCCTACGCAGATTGGTGGTGCCCACACATCggt > 8:157057‑M1/115‑148 (MQ=255) atatAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCtcatcaaacaaaatgcaacccattgttttc < 4:14502‑M2/147‑31 (MQ=255) gccctaccgggccaaccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctgggtgatCTCCTACGCAGATTGGTGGTGCCCACACATCggtg > 3:125234‑M1/114‑148 (MQ=255) ccctaccgggccaaccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctgggtgatCTCCTACGCAGATTGGTGGTGCCCACACATCggtgg > 1:50376‑M1/113‑148 (MQ=255) ataGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACGCAGATTGGTGGTGCCCACACATCggtgg < 6:157462/148‑1 (MQ=255) tGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCtcatcaaacaaaatgcaacccattgttttctaagcac < 7:53119‑M2/147‑38 (MQ=255) ggAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCtcatcaaacaaaatgcaacccattgttttcta < 8:156462‑M2/139‑33 (MQ=255) gAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCtcatcaaacaaaatgcaacccattgttttctaa > 7:156462‑M2/1‑106 (MQ=255) gcgcTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCtcatcaaacaaaatgcaacccattgttttctaagcactcaagcg > 2:176297‑M2/1‑104 (MQ=255) cgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctgggtgatCTCCTACGCAGATTGGTGGTGCCCACACATCGGTGGGTGTACACAGCccgc < 3:40044‑M1/51‑1 (MQ=255) gTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACGCAGATTGGTGGTGCCCACACATCGGTGGGTGTACACAGCccgcc < 3:160846/146‑1 (MQ=255) gTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACGCAGATTGGTGGTGCCCACACATCGGTGGGTGTACACAGCccgcc < 2:124356/146‑1 (MQ=255) tttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctgggtgatCTCCTACGCAGATTGGTGGTGCCCACACATCGGTGGGTGTACACAGCCCGCCGTATgcgc < 8:131213‑M1/60‑1 (MQ=255) ggTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCtcatcaaacaaaatgcaacccattgttttctaagcactcaagcggccaccagttgatacc > 5:127225‑M2/1‑88 (MQ=255) gTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCtcatcaaacaaaatgcaacccattgttttctaagcactcaagcggccaccagttgataccc > 1:54134‑M2/1‑87 (MQ=255) ttACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCtcatcaaacaaaatgcaacccattgttttctaagcactcaagcggccaccagttgatacccca > 1:26358‑M2/1‑85 (MQ=255) ttACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCtcatcaaacaaaatgcaacccattgttttctaagcactcaagcggccaccagttgatacccca > 8:53119‑M2/1‑85 (MQ=255) cgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctgggtgatCTCCTACGCAGATTGGTGGTGCCCACACATCGGTGGGTGTACACAGCCCGCCGTATGCGCGGTAAACCCGCGAACACCg > 6:23864‑M1/70‑148 (MQ=255) gTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCtcatcaaacaaaatgcaacccattgttttctaagcactcaagcggccaccagttgataccccagtttccgggctttgcgaa > 4:25971‑M2/1‑67 (MQ=255) gaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctgggtgatCTCCTACGCAGATTGGTGGTGCCCACACATCGGTGGGTGTACACAGCCCGCCGTATGCGCGGTAAACCCGCGAACACCGGCAACGc < 4:35828‑M1/86‑1 (MQ=255) ggCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCtcatcaaacaaaatgcaacccattgttttctaagcactcaagcggccaccagttgataccccagtttccgggctttgcgaagcaaagcc < 1:51035‑M2/148‑90 (MQ=255) ccccACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCtcatcaaacaaaatgccacccattgttttctaagcactcaagcggcccccagttgataccccagtttccgggctttgcgaagcaaagcccggacct < 5:15223‑M2/148‑97 (MQ=255) ccacccacTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCtcatcaaacaaaatgcaacccattgttttctaagcactcaagcggccaccagttgataccccagtttccgggctttgcgaagcaaagcccggacctgc < 6:85003‑M2/148‑99 (MQ=255) acccacTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCtcatcaaacaaaatgcaacccattgttttctaagcactcaagcggccaccagttgataccccagtttccgggctttgcgaagcaaagcccggccctgccg < 7:145821‑M2/148‑101 (MQ=255) tcatgtttgctgcgcgacagcgcagcccggaagggctgggtgatCTCCTACGCAGATTGGTGGTGCCCACACATCGGTGGGTGTACACAGCCCGCCGTATGCGCGGTAAACCCGCGAACACCGGCAACGCCGGTGCCATCCCTACtt < 1:53638‑M1/103‑1 (MQ=255) aCCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCtcatcaaacaaaatgcaacccattgttttctaagcactcaagcggccaccagttgataccccagtttccgggctttgcgaagcaaagcccggacctgccggtcttggcttc < 7:37560‑M2/148‑112 (MQ=255) gcgcagcccggaagggctgggtgatCTCCTACGCAGATTGGTGGTGCCCACACATCGGTGGGTGTACACAGCCCGCCGTATGCGCGGTAAACCCGCGAACACCGGCAACGCCGGTGCCATCCCTACTTCAATATCGCCCCGCCACCAt > 5:84600‑M1/26‑148 (MQ=255) accaccGCATTCGCGGGTAAACCCGCTCCTACGCAGATTGGTGGTGCCCACACATCGGTGGGTGTACACAGCCCGCCGTATGCGCGGTAAACCCGCGAACACCGGCAACGCCGGTGCCATCCCTACTTCAATATCGCCCCGcccccct > 5:9224/1‑146 (MQ=255) caccGCATTCGCGGGTAAACCCGCTCtcatcaaacaaaatgcaacccattgttttctaagcactcaagcggccaccagttgataccccagtttccgggctttgcgaagcaaagcccggacctgccggtcttggcttctggtttcgaac < 8:123944‑M2/148‑123 (MQ=255) cccggaagggctgggtgatCTCCTACGCAGATTGGTGGTGCCCACACATCGGTGGGTGTACACAGCCCGCCGTATGCGCGGTAAACCCGCGAACACCGGCAACGCCGGTGCCATCCCTACTTCAATATCGCCCCGCCACCATCCCGAt > 4:40044‑M1/20‑148 (MQ=255) cATTCGCGGGTAAACCCGCTCtcataaaacaaaatgcaacccattgttttctaagcactcaagcggccaccagttgatacccaagtttccgggctttgcgaagcaaagcccggacctgccggtcttggcttatggtttcgaactcct < 6:82976‑M2/147‑127 (MQ=255) cATTCGCGGGTAAACCCGCTCCTACGCAGATTGGTGGTGCCCACACATCGGTGGGTGTACACAGCCCGCCGTATGCGCGGTAAACCCGCGAACACCGGCAACGCCGGTGCCATCCCTACTTCAATATCGCCCCGCCACCATCCCGATg < 6:98725/148‑1 (MQ=255) ttCGCGGGTAAACCCGCTCtcatcaaacaaaatgcaacccattgttttctaagcactcaagcggccaccagttgatacccaagtttcccggctttgcgaagcaaagccaggacctgccggtcttggcttctgggttagaactcct < 8:5376‑M2/145‑127 (MQ=255) ggaagggctgggtgatCTCCTACGCAGATTGGTGGTGCCCACACATCGGTGGGTGTACACAGCCCGCCGTATGCGCGGTAAACCCGCGAACACCGGCAACGCCGGTGCCATCCCTACTTCAATATCGCCCCGCCACCATCCCGATGGa > 8:35283‑M1/17‑148 (MQ=255) gcgGGTAAACCCGCTCtcatcaaacaaaatgcaacccattgttttctaagcactcaagcggccaccagttgataccccagtttccgggctttgcgaagcaaagcccggacctgccggtcttggcttctggtttcgaactcctca < 7:108527‑M2/144‑129 (MQ=255) tAAACCCGCTCtcatcaaacaaaatccaacccattgtgttctaaccacgcacgcgcccaccagttgataccccagtttccgggctttgctaagcaaagcccggacctgccggtcttggcttctggtttcgaactcctcaagaccttgt > 3:107145‑M2/1‑11 (MQ=255) aCCCGCTCtcatcaaacaaaatgcaacccattgttttctaagcactcaagcggccaccagttgataccccagtttccgggctttgcgaagcaaagcccggacctgccggtcttggcttctggtttcgaactcctcaagaccttgttca < 4:24560‑M2/148‑141 (MQ=255) ccGCTCtcatcaaacaaaatgcaacccattgttttctaagcactcaagcggccaccagttgataccccagtttccgggctttgcgaagcaaagcccggacctgccggtctttgcttctggtttcgcactactcaagaccttgttcaa < 7:159331‑M2/147‑142 (MQ=255) tcgctcataaaacaaaatccaacccattgttttctaagcactcacgcgccccccagttgatcccccagttgccgggctttgcgaacaaaagcccggacctgccggtcttggcttctggtttcgaactcctcaagaccttgttcaacat > 3:145034‑M2/4‑4 (MQ=255) ctctcatcaaacaaaatgcaacccattgttttctaagcactcaagcggccaccagttgataccccagtttccgggctttgcgaagcaaagcccggacctgccggtcttggcttctggtttcgaactcctcaagaccttgttcaaca < 7:114355‑M2/146‑144 (MQ=255) tctcatcaaacaaaatgcaacccattgttttctaagcactcaagcggccaccagttgataccccagtttccgggctttgcgaagcaaagcccggacctgccggtcttggcttctggtttcgaactcctcaagaccttgttcaacctaa < 7:123294‑M2/148‑147 (MQ=255) tctcatcaaacaaaatgcaacccattgttttctaagcactcaagcggccaccagttgataccccagtttccgggctttgcgaagcaaagcccggacctgcagctctttgcttctggtttcgaactcctaaagaccttgttcaaca < 6:39903‑M2/145‑144 (MQ=255) tctaatcaaacaaaatgcaccccattgttttctaagcactcaagcggccaccagttgataccccagttgccgggctttgcgaagcaaagcccggacctgccggtcttggcttctggtttcgaactcctcaagaccttgttcaacataa > 1:127359‑M2/1‑2 (MQ=255) cctcaccaaaaaaaagccaacccattgtttgctaacccctcacgcggccaccagttgataccccagtttcggggctttgcaaagaaatgcccggacctgccggtcttggcttctggtttcgaactcctcaagaccttgttcaacataa > 1:8309‑M2/2‑2 (MQ=255) ctcatcaaacaaaatgcaacccattgttttctaagcactcaagcggccaccagttgataccccagtttccgggctttgcgaagcaaagcccggacctgccggtcttggcttctggtttcgaactcctcaagaccttgttaaacataag < 5:55848‑M2/148‑148 (MQ=255) | GTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCCCCACCCACTGTCCACCGCAGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACGCAGATTGGTGGTGCCCACACATCGGTGGGTGTACACAGCCCGCCGTATGCGCGGTAAACCCGCGAACACCGGCAACGCCGGTGCCATCCCTACTTCAATATCGCCCCGCCACCATCCCGATGGAACCCCCGCCAATCCCCCG > NC_002947/5389278‑5389572 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |