New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 35503 = | 56 (1.060) | 3 (0.060) | 3/242 | NT | 5.7% | coding (125/588 nt) | PP_0031 | hypothetical protein |
? | NC_002947 | 35545 = | 46 (0.910) | coding (83/588 nt) | PP_0031 | hypothetical protein |
ACTGTCCAGCTCGATGAGCTGACCTCGCAGACGCGCACCTCCAGCGCTGTTCTGGAGAGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/35564‑35503 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggtcAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGTCATTCATGGCTATCTCCTAGGGCGGCCAACAACGCCGCGCTGAATTAACGCGCTAGATATCAAAATTGT > NC_002947/35545‑35689 ACTGTCCAGCTCGATGAGCTGACCTCGCAGACGCGCACCTCCAGCGCTGTTCTGGAGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAA < 3:93471/106‑1 ACTGTCCAGCTCGATGAGCTGACCTCGCAGACGCGCACCTCCAGCGCTGTTCTGGAGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAA > 4:93471/1‑106 GACCTCGCAGACGCGCACCTCCAGCGCTGTTCTGGAGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGTCATTCATGGCTATCTCCTAGGGCGGCCAAC > 7:40939/1‑148 GTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGTCATTCATGGCTATCTCCTAGGGCGGCCAACAACGCCGCGCTGAATTAACGCGCTAGATATCAAAATTGT > 4:326359/1‑148 ACTGTCCAGCTCGATGAGCTGACCTCGCAGACGCGCACCTCCAGCGCTGTTCTGGAGAGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/35564‑35503 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggtcAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGTCATTCATGGCTATCTCCTAGGGCGGCCAACAACGCCGCGCTGAATTAACGCGCTAGATATCAAAATTGT > NC_002947/35545‑35689 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |