New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	35503 =	56 (1.060)	3 (0.060)	3/242	NT	5.7%	coding (125/588 nt)	PP_0031	hypothetical protein
	?	NC_002947	35545 =	46 (0.910)					coding (83/588 nt)	PP_0031	hypothetical protein

AAGGCAACCTCCTCCGCGTTCGACCAAGCCTTCTCCGCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGTCATTCATGGCTATCTCCTAGGGCGGCCAACAACGCCGCGCTGAATTAACGCGCTAGATATCAAAATTGTAATT  >  NC_002947/35404‑35693                                                                                                                                              |                                                                                                                                                     aaGGCAACCTCCTCCGCGTTCGACCAAGCCTTCTCCGCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATc                                                                                                                                               >  2:195077/1‑149 (MQ=255)    gCAACCTCCTCCGCGTTCGACCAAGCCTTCTCCGCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAg                                                                                                                                            >  3:277975/1‑149 (MQ=255)     cAACCTCCTCCGCGTTCGACCAAGCCTTCTCCGCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAg                                                                                                                                            <  4:277975/148‑1 (MQ=255)      aaCCTCCTCCGCGTTCGACCAAGCCTTCTCCGCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGc                                                                                                                                           <  3:128828/148‑1 (MQ=255)      aaCCTCCTCCGCGTTCGACCAAGCCTTCTCCGCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGc                                                                                                                                           >  4:128828/1‑148 (MQ=255)         ctcctcCGCGTTCGACCAAGCCTTCTCCGCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGa                                                                                                                                       <  6:176393/149‑1 (MQ=255)         ctcctcCGCGTTCGACCAAGCCTTCTCCGCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGa                                                                                                                                       <  4:67523/149‑1 (MQ=255)                      gACCAAGCCTTCTCCGCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGAGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGttttt                                                                                                                           >  2:188920/1‑148 (MQ=255)                       aCCAAGCCTTCTCCGCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGttttt                                                                                                                           >  1:37151/1‑147 (MQ=255)                         cAAGCCTTCTCCGCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGt                                                                                                                       <  2:493/149‑1 (MQ=255)                          aaGCCTTCTCCGCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCt                                                                                                                                          <  2:59629/129‑1 (MQ=255)                          aaGCCTTCTCCGCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCt                                                                                                                                          >  1:59629/1‑129 (MQ=255)                               ttCTCCGCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCa                                                                                                                                                      >  8:247129/1‑112 (MQ=255)                               ttCTCCGCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCa                                                                                                                                                      <  7:247129/112‑1 (MQ=255)                                   ccGCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAg                                                                                                                                                     >  8:65238/1‑109 (MQ=255)                                   ccGCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAg                                                                                                                                                     <  7:65238/109‑1 (MQ=255)                                   ccGCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGCATCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAgcggcg                                                                                                              >  2:300179/1‑148 (MQ=255)                                     gCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGa                                                                                                             >  2:2395/1‑147 (MQ=255)                                           cGCACCTCCTCCTGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCAc                                                                                                      <  2:37151/148‑1 (MQ=255)                                           cGCACCTCCTCCTGAATCTGCCGGCCGACAGCATCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCAc                                                                                                      <  1:300179/148‑1 (MQ=255)                                               cctcctcctGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATa                                                                                                 <  1:2395/149‑1 (MQ=255)                                                ctcctcctGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAg                                                                                                          <  2:193095/139‑1 (MQ=255)                                                ctcctcctGAATCTGCCGGCCGACAGCATCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAg                                                                                                          >  1:193095/1‑139 (MQ=255)                                                   ctcctGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAgcgg                                                                                                                >  6:316557/1‑130 (MQ=255)                                                   ctcctGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAgcgg                                                                                                                <  5:316557/130‑1 (MQ=255)                                                   ctcctGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCaa                                                                                             >  8:198630/1‑149 (MQ=255)                                                     cctGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGaaa                                                                                                           <  2:205501/133‑1 (MQ=255)                                                     cctGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGaaa                                                                                                           >  1:205501/1‑133 (MQ=255)                                                      ctGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCa                                                                                                                         <  7:317261/118‑1 (MQ=255)                                                      ctGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCa                                                                                                                         >  8:317261/1‑118 (MQ=255)                                                      ctGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTg                                                                                          >  8:105848/1‑149 (MQ=255)                                                        tttcgccgctgcactgaaaaactcactgtccagctcgatgagctGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGt                                                                                                                                   <  3:93471‑M1/62‑1 (MQ=255)                                                        tttcgccgctgcactgaaaaactcactgtccagctcgatgagctGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGt                                                                                                                                   >  4:93471‑M1/45‑106 (MQ=255)                                                        gAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGt                                                                                                                                   <  8:230240/106‑1 (MQ=255)                                                        gAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGt                                                                                                                                   >  7:230240/1‑106 (MQ=255)                                                         aaTCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCACCGGCGAAAGTCACCGATAGCAACTGccc                                                                                       <  1:195077/149‑1 (MQ=255)                                                               ccggccgACAGAGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAggg                                                                                   <  1:188920/147‑1 (MQ=255)                                                                     gACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGt                                                                           >  1:3893/1‑149 (MQ=255)                                                                           gTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCa                                                                                                       <  5:74332/115‑1 (MQ=255)                                                                           gTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCa                                                                                                       >  6:74332/1‑115 (MQ=255)                                                                           gTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGtcattca                                                                     >  2:305911/1‑149 (MQ=255)                                                                              cACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCCGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACt                                                                                           >  8:200187/1‑124 (MQ=255)                                                                              cACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCCGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACt                                                                                           <  7:200187/124‑1 (MQ=255)                                                                                actgtccagctcgatgagctgacctcgcagacgcgcacctccagcgctgttctggagaggtcAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGaaa                                                                                                           <  3:93471‑M2/44‑1 (MQ=255)                                                                                actgtccagctcgatgagctgacctcgcagacgcgcacctccagcgctgttctggagaggtcAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGaaa                                                                                                           >  4:93471‑M2/63‑106 (MQ=255)                                                                                    cTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGTCATTCATGGCTAtc                                                             <  1:305911/148‑1 (MQ=255)                                                                                       caccaGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGTCATTCATGGCTATCTcc                                                          >  8:80378/1‑148 (MQ=255)                                                                                        accaGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGTCATTCATGGCTATCTcc                                                          >  5:106517/1‑147 (MQ=255)                                                                                                gttcgACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGTCATTCATGGCTATCTCCTAGggcggc                                                 <  2:3893/148‑1 (MQ=255)                                                                                                    gacctcgcagacgcgcacctccagcgctgttctggagaggtcAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGTCATTCATGGCTATCTCCTAGGGCGGCcaac                                             >  7:40939‑M2/43‑148 (MQ=255)                                                                                                          tcCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGtcattca                                                                     <  2:321356/118‑1 (MQ=255)                                                                                                          tcCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGtcattca                                                                     >  1:321356/1‑118 (MQ=255)                                                                                                            cAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGTCATTCATGGCTATCTCCTAGGGCGGCCAACAACGCcgcg                                    >  2:120337/1‑149 (MQ=255)                                                                                                                            gTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGTCATTCATGGCTATCTCCTAGGGCGGCCAACAACGCCGCGCTGAATTAACgcgc                      >  6:279359/1‑147 (MQ=255)                                                                                                                            gTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGTCATTCATGGCTATCTCCTAGGGCGGCCAACAACGCCGCGCTGAATTAACGCGCTa                    <  7:105848/149‑1 (MQ=255)                                                                                                                                           gtcAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGTCATTCATGGCTATCTCCTAGGGCGGCCAACAACGCCGCGCTGAATTAACGCGCTAGATATCAAAATTGt      >  4:326359‑M2/4‑148 (MQ=255)                                                                                                                                              aGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGTCATTCATGGCTATCTCCTAGGGCGGCCAACAACGCCGCGCTGAATTAACGCGCTAGATATCAAAATTGTAAtt  <  3:326359/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                     AAGGCAACCTCCTCCGCGTTCGACCAAGCCTTCTCCGCCTTTCGCACCTCCTCCTGAATCTGCCGGCCGACAGCGTCCACCTGCTCCACCAGTTCGTTCGACCTCTCCAGAACAGCGCTGGAGGTGCGCGTCTGCGAGGTCAGCTCATCGAGCTGGACAGTGAGTTTTTCAGTGCAGCGGCGAAAGTCACCGATAGCAACTGCCCAGGGCTCTATGTCATTCATGGCTATCTCCTAGGGCGGCCAACAACGCCGCGCTGAATTAACGCGCTAGATATCAAAATTGTAATT  >  NC_002947/35404‑35693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.