New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	715298 =	36 (0.680)	4 (0.080)	4/244	NT	9.7%	coding (196/483 nt)	PP_0607	type IV pili biogenesis protein FimT
	?	NC_002947	715387 =	40 (0.790)					coding (107/483 nt)	PP_0607	type IV pili biogenesis protein FimT

GGCCGTGGCGGTCTTGCTGACCCAGCTGGGCATGCCGGCCTACGCCAGAATGAGCGATGACCTGCACCGGGCGGCGGCTGCCCGTGATCTGGCGCAGGCGCTGCGCAGTGCACGCAGCCATGCGCTGTTGCAGGGTCAGCCGGTGCTGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/715449‑715298 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgcAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGTATCAGTGTTACGCCGCGTTGCTTCACCGT  >  NC_002947/715387‑715496                                                                                                                                                                                                                                                                        GGCCGTGGCGGTCTTGCTGACCCAGCTGGGCATGCCGGCCTACGCCAGAATGAGCGATGACCTGCACCGGGCGGCGGCTGCCCGTGATCTGGCGCAGGCGCTGCGCAGTGCACGCAGCCATGCGCTGTTGCAGGGTCAGCCGGTGCTG                                                                                                                    <  3:217330/148‑1                   GACCCAGCTGGGCATGCCGGCCTACGCCAGAATGAGCGATGACCTGCACCGGGCGGCGGCTGCCCGTGATCTGGCGCAGGCGCTGCGCAGTGCACGCAGCCATGCGCTGTTGCAGGGTCAGCCGGTGCTG                                                                                                                    <  5:114643/130‑1                   GACCCAGCTGGGCATGCCGGCCTACGCCAGAATGAGCGATGACCTGCACCGGGCGGCGGCTGCCCGTGATCTGGCGCAGGCGCTGCGCAGTGCACGCAGCCATGCGCTGTTGCAGGGTCAGCCGGTGCTG                                                                                                                    >  6:114643/1‑130                                                               TGCACCGGGCGGCGGCTGCCCGTGATCTGGCGCAGGCGCTGCGCAGTGCACGCAGCCATGCGCTGTTGCAGGGTCAGCCGGTGCTGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCAC                                                     >  6:349345/1‑149                                                                                     TGATCTGGCGCAGGCGCTGCGCAGTGCACGCAGCCATGCGCTGTTGCAGGGTCAGCCGGTGCTGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGT                               <  5:349345/149‑1                                                                                               CAGGCGCTGCGCAGTGCACGCAGCCATGCGCTGTTGCAGGGTCAGCCGGTGCTGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATG                                                                               <  5:151060/91‑1                                                                                               CAGGCGCTGCGCAGTGCACGCAGCCATGCGCTGTTGCAGGGTCAGCCGGTGCTGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATG                                                                               >  6:151060/1‑91                                                                                                                                                       GCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGTATCAGTGTTACGCCGCGTTGCTTCACCGT  >  2:119828/1‑112                                                                                                                                                                                                                                                                        GGCCGTGGCGGTCTTGCTGACCCAGCTGGGCATGCCGGCCTACGCCAGAATGAGCGATGACCTGCACCGGGCGGCGGCTGCCCGTGATCTGGCGCAGGCGCTGCGCAGTGCACGCAGCCATGCGCTGTTGCAGGGTCAGCCGGTGCTGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/715449‑715298 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgcAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGTATCAGTGTTACGCCGCGTTGCTTCACCGT  >  NC_002947/715387‑715496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.