New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	715298 =	36 (0.680)	4 (0.080)	4/244	NT	9.7%	coding (196/483 nt)	PP_0607	type IV pili biogenesis protein FimT
	?	NC_002947	715387 =	40 (0.790)					coding (107/483 nt)	PP_0607	type IV pili biogenesis protein FimT

CACGCCCAGCGCACTGAATTTGAACTGCTCACCGCGATTGCTGGTTATTTTCAGCGGCTTTGAAAGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCA  >  NC_002947/715155‑715444                                                                                                                                                    |                                                                                                                                                   cACGCCCAGCGCACTGAATTTGAACTGCTCACCGCGATTGCTGGTTATTTTCAGCGGCTTTGAAAGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGccagcacca                                                                                                                                               <  4:190903/149‑1 (MQ=255) cACGCCCAGCGCACTGAATTTGAACTGCTCACCGCGATTGCTGGTTATTTTCAGCGGCTTTGAAAGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGccagcacca                                                                                                                                               <  3:22823/149‑1 (MQ=255)             aCTTAATTTGAACTGCTCACCGCGATTGCTGGTTATTTTCAGCGGCTTTGAAAGGCGCCAGTTCGCGCAGCAACCCTAGCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGc                                                                                                                                       <  1:282415/149‑1 (MQ=255)                             tCACCGCGATTGCTGGTTATTTTCAGCGGCTTTGAAAGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGccag                                                                                                                                                    >  1:35982/1‑116 (MQ=255)                               aCCGCGATTGCTGGTTATTTTCAGCGGCTTTGAAAGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAgcg                                                                                                                       <  6:124587/143‑1 (MQ=255)                               aCCGCGATTGCTGGTTATTTTCAGCGGCTTTGAAAGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAgcg                                                                                                                       >  5:124587/1‑143 (MQ=255)                                      acggtgaagcaacgcggcgtaacactgatacaaatgttgtcggccttggccgtggcggtcttgctgacccagctgggcatgccggcctacgccagaatgagcgatgacctGc                                                                                                                                                   >  2:119828‑M1/111‑112 (MQ=255)                                       tGCTGGTTATTTTCAGCGGCTTTGAAAGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCt                                                                                                                                <  2:202436/126‑1 (MQ=255)                                       tGCTGGTTATTTTCAGCGGCTTTGAAAGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCt                                                                                                                                >  1:202436/1‑126 (MQ=255)                                         cTGGTTATTTTCAGCGGCTTTGAAAGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGAcc                                                                                                                                  >  3:118297/1‑122 (MQ=255)                                         cTGGTTATTTTCAGCGGCTTTGAAAGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGAcc                                                                                                                                  <  4:118297/122‑1 (MQ=255)                                          tGGTTATTTTCAGCGGCTTTGAAAGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTg                                                                                                      >  5:144001/1‑149 (MQ=255)                                            gTTATTTTCAGCGGCTTTGAAAGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTgcg                                                                                                    >  5:105822/1‑149 (MQ=255)                                             ttATTTTCAGCGGCTTTGAAAGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCgg                                                                                                                                        >  5:291815/1‑112 (MQ=255)                                             ttATTTTCAGCGGCTTTGAAAGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCgg                                                                                                                                        <  6:291815/112‑1 (MQ=255)                                                 tttCAGCGGCTTTGAAAGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAgcg                                                                                               >  8:122196/1‑149 (MQ=255)                                                      gCGGCTTTGAAAGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTgc                                                                                          >  6:210382/1‑149 (MQ=255)                                                              gAAAGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGAt                                                                                   >  4:158022/1‑148 (MQ=255)                                                               aaaGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCa                                                                                 >  5:307790/1‑149 (MQ=255)                                                               aaaGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCa                                                                                 <  6:105822/149‑1 (MQ=255)                                                                   acaaatgttgtcggccttggccgtggcggtcttgctgacccagctgggcatgccggcctacgccagaatgagcgatgacctGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCa                                                                                 <  5:349345‑M1/68‑1 (MQ=255)                                                                     g‑cTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAgc                                                                                                                        <  8:177458/104‑1 (MQ=255)                                                                                         gtggcggtcttgctgacccagctgggcatgccggcctacgccagaatgagcgatgacctGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCa                                                           >  6:349345‑M1/60‑149 (MQ=255)                                                                                           gCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAgg                                                         >  4:62966/1‑149 (MQ=255)                                                                                           gCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAgg                                                         >  4:341986/1‑149 (MQ=255)                                                                                            ccGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAg                                                          <  5:210382/147‑1 (MQ=255)                                                                                            ccGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAg                                                          <  7:122196/147‑1 (MQ=255)                                                                                            ccGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAg                                                          <  6:144001/147‑1 (MQ=255)                                                                                               gTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCAt                                                     >  1:67993/1‑149 (MQ=255)                                                                                                        cAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCTGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAg                                                          <  8:221567/135‑1 (MQ=255)                                                                                                        cAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAg                                                          >  7:221567/1‑135 (MQ=255)                                                                                                                cccGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTa                                     <  2:67993/148‑1 (MQ=255)                                                                                                                   catgccggcctacgccagaatgagcgatgacctGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTg                                                                                           <  5:151060‑M1/58‑1 (MQ=255)                                                                                                                   catgccggcctacgccagaatgagcgatgacctGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTg                                                                                           >  6:151060‑M1/34‑91 (MQ=255)                                                                                                                          aTTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGc                          >  3:333569/1‑149 (MQ=255)                                                                                                                              ccccAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAg                      >  3:161188/1‑149 (MQ=255)                                                                                                                               cccAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGc                     <  4:333569/149‑1 (MQ=255)                                                                                                                                  aaTTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTgg                  <  3:341986/149‑1 (MQ=255)                                                                                                                                        cGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGc            <  6:307790/149‑1 (MQ=255)                                                                                                                                        cGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGc            <  3:62966/149‑1 (MQ=255)                                                                                                                                          tCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCaa          <  3:158022/149‑1 (MQ=255)                                                                                                                                             aGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGAc       >  3:285210/1‑149 (MQ=255)                                                                                                                                               cgcCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCTGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGc                                  <  7:77027/120‑1 (MQ=255)                                                                                                                                               cgcCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCGGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGc                                  >  8:77027/1‑120 (MQ=255)                                                                                                                                                 ccagcaccagcaCCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGcc   >  3:240799/1‑149 (MQ=255)                                                                                                                                                  cagcaccagcacCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCgg                                                               >  7:302784/1‑88 (MQ=255)                                                                                                                                                  cagcaccagcacCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCgg                                                               <  8:302784/88‑1 (MQ=255)                                                                                                                                                  cagcaccagcacCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCa  >  6:117882/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CACGCCCAGCGCACTGAATTTGAACTGCTCACCGCGATTGCTGGTTATTTTCAGCGGCTTTGAAAGGCG‑CTGTTCGCGCAGCA‑‑CCT‑GCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCA  >  NC_002947/715155‑715444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.