New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	715298 =	36 (0.680)	4 (0.080)	4/244	NT	9.7%	coding (196/483 nt)	PP_0607	type IV pili biogenesis protein FimT
	?	NC_002947	715387 =	40 (0.790)					coding (107/483 nt)	PP_0607	type IV pili biogenesis protein FimT

CTGCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGTATCAGTGTTACGCCGCGTTGCTTCACCGTGCATTCCTCCCTGG  >  NC_002947/715239‑715510                                                                                                                                                     |                                                                                                                            gtggcggtcttgctgacccagctgggcatgccggcctacgccagaatgagcgatgacctGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCa                                                                                                                             >  6:349345‑M1/60‑149 (MQ=255)   gCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAgg                                                                                                                           >  4:341986/1‑149 (MQ=255)   gCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAgg                                                                                                                           >  4:62966/1‑149 (MQ=255)    ccGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAg                                                                                                                            <  7:122196/147‑1 (MQ=255)    ccGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAg                                                                                                                            <  6:144001/147‑1 (MQ=255)    ccGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAg                                                                                                                            <  5:210382/147‑1 (MQ=255)       gTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCAt                                                                                                                       >  1:67993/1‑149 (MQ=255)                cAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCTGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAg                                                                                                                            <  8:221567/135‑1 (MQ=255)                cAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAg                                                                                                                            >  7:221567/1‑135 (MQ=255)                        cccGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTa                                                                                                       <  2:67993/148‑1 (MQ=255)                                  aTTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGc                                                                                            >  3:333569/1‑149 (MQ=255)                                      ccccAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAg                                                                                        >  3:161188/1‑149 (MQ=255)                                       cccAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGc                                                                                       <  4:333569/149‑1 (MQ=255)                                          aaTTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTgg                                                                                    <  3:341986/149‑1 (MQ=255)                                                cGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGc                                                                              <  6:307790/149‑1 (MQ=255)                                                cGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGc                                                                              <  3:62966/149‑1 (MQ=255)                                                  tCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCaa                                                                            <  3:158022/149‑1 (MQ=255)                                                     aGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGAc                                                                         >  3:285210/1‑149 (MQ=255)                                                       cgcCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCTGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGc                                                                                                    <  7:77027/120‑1 (MQ=255)                                                       cgcCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCGGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGc                                                                                                    >  8:77027/1‑120 (MQ=255)                                                         ccagcaccagcaCCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGcc                                                                     >  3:240799/1‑149 (MQ=255)                                                          cagcaccagcacCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCa                                                                    >  6:117882/1‑149 (MQ=255)                                                           tgcaccgggcggcggctgcccgtgatctggcgcaggcgctgcgcagtgcacgcagccatgcgctgttgcagggtcagccggtgctggtgcAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCAc                                                                   >  6:349345‑M2/91‑149 (MQ=255)                                                                CAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTc                                                                                 <  5:114643‑M1/130‑1 (MQ=255)                                                                CAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTc                                                                                 >  6:114643‑M1/1‑130 (MQ=255)                                                                CAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGcc                                                               <  3:217330‑M1/148‑1 (MQ=255)                                                                 agcaccGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGcc                                                               >  7:297617/1‑147 (MQ=255)                                                                   caccGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCt                                                                                      >  1:231534/1‑122 (MQ=255)                                                                   caccGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCt                                                                                      <  2:231534/122‑1 (MQ=255)                                                                      cGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCg                                                        <  4:240799/149‑1 (MQ=255)                                                                              ccTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGc                                                                              >  4:180979/1‑119 (MQ=255)                                                                              ccTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGc                                                                              <  3:180979/119‑1 (MQ=255)                                                                                 tgatctggcgcaggcgctgcgcagtgcacgcagccatgcgctgttgcagggtcagccggtgctggtgcAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGt                                             <  5:349345‑M2/81‑1 (MQ=255)                                                                                 gCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTg                                              >  7:135404/1‑148 (MQ=255)                                                                                  cAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTg                                              <  4:217330/147‑1 (MQ=255)                                                                                      aGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGTATCAg                                        >  2:211496/1‑149 (MQ=255)                                                                                      aGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGTATCAg                                        >  8:185431/1‑149 (MQ=255)                                                                                       gcgcATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGTATCAgt                                       <  4:161188/149‑1 (MQ=255)                                                                                         gcATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCAc                                                                   >  4:263316/1‑119 (MQ=255)                                                                                         gcATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCAc                                                                   <  3:263316/119‑1 (MQ=255)                                                                                           caggcgctgcgcagtgcacgcagccatgcgctgttgcagggtcagccggtgctggtgcAGGTCATCGCTCATTCTGGCGTAGGCCGGCATg                                                                                             >  6:151060‑M2/59‑91 (MQ=255)                                                                                           caggcgctgcgcagtgcacgcagccatgcgctgttgcagggtcagccggtgctggtgcAGGTCATCGCTCATTCTGGCGTAGGCCGGCATg                                                                                             <  5:151060‑M2/33‑1 (MQ=255)                                                                                              gCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACAttt                                               >  8:149620/1‑134 (MQ=255)                                                                                              gCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACAttt                                               <  7:149620/134‑1 (MQ=255)                                                                                               cTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGcc                                                         >  8:240831/1‑123 (MQ=255)                                                                                               cTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGcc                                                         <  7:240831/123‑1 (MQ=255)                                                                                                   gTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGTATCAGTGTTACGCCGCGt                           >  5:67315/1‑149 (MQ=255)                                                                                                         tGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGTATCAGTGTTACGCCGCGTTGCtt                      >  6:57138/1‑148 (MQ=255)                                                                                                                  ccTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGTATCAGTGTTACGCCGCGTTGCTTCACCGTGCAt            >  6:314932/1‑149 (MQ=255)                                                                                                                   cTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGTATCAGTGTTACGCCGCGTTGCTTCACCGTGCAtt           >  2:21594/1‑149 (MQ=255)                                                                                                                      cgcCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGTATCAGTGTTACGCCGCGTTGCTTCACCGTGCATtc          <  6:67315/147‑1 (MQ=255)                                                                                                                         cAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGTATCAGTGTTACGCCGCGTTGCTTCACCGTGCATTCCTccc     >  6:347967/1‑149 (MQ=255)                                                                                                                          aGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGTATCAGTGTTACGCCGCGTTGCTTCACCGTGCATTCCTCCCt    <  5:117882/149‑1 (MQ=255)                                                                                                                          aGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGTATCAGTGTTACGCCGCGTTGCTTCACCGTGCATTCCTCCCt    <  8:297617/149‑1 (MQ=255)                                                                                                                            aTCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGTATCAGTGTTACGCCGCGTTGCTTCACCGTGCATTCCTCCCTgg  <  4:285210/149‑1 (MQ=255)                                                                                                                                                   gcAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGTATCAGTGTTACGCCGCGTTGCTTCACCGt                >  2:119828‑M2/3‑112 (MQ=255)                                                                                                                                                     |                                                                                                                            CTGCCGGTTATGCTCCAGCACTACCCGCCACCCATTCCCCCAATTACCGTCCAGCGCCAGCACCAGCACCGGCTGACCCTGCAACAGCGCATGGCTGCGTGCACTGCGCAGCGCCTGCGCCAGATCACGGGCAGCCGCCGCCCGGTGCAGGTCATCGCTCATTCTGGCGTAGGCCGGCATGCCCAGCTGGGTCAGCAAGACCGCCACGGCCAAGGCCGACAACATTTGTATCAGTGTTACGCCGCGTTGCTTCACCGTGCATTCCTCCCTGG  >  NC_002947/715239‑715510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.