| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 724297 = | 47 (0.890) | 6 (0.120) | 4/248 | NT | 12.9% | coding (334/861 nt) | PP_0618 | branched‑chain amino acid ABC transporter permease |
| ? | NC_002947 | 724330 = | 35 (0.680) | coding (301/861 nt) | PP_0618 | branched‑chain amino acid ABC transporter permease | |||||
GGCGCTGCTGATTGCGCCACTGGTGGTGGCCGCGCTGGCCTGGGCGGTCGAGCGCCTGTTGATCAAACGCATCTACCACCTGCCGCACACCTTCCAGATCCTCGTCACCCTCGGCATCGCGCTGATCATCCAGGAAGCGTCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/724442‑724297‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCGCCAGCCAGAAGTTGCCGGTGACGGC > NC_002947/724330‑724465 GGCGCTGCTGATTGCGCCACTGGTGGTGGCCGCGCTGGCCTGGGCGGTCGAGCGCCTGTTGATCAAACGCATCTACCACCTGCCGCACACCTTCCAGATCCTCGTCACCCTCGGCATCGCGCTGATCATCCAGGAAGCGTCGGT < 3:182748/144‑1GGCGCTGCTGATTGCGCCACTGGTGGTGGCCGCGCTGGCCTGGGCGGTCGAGCGCCTGTTGATCAAACGCATCTACCACCTGCCGCACACCTTCCAGATCCTCGTCACCCTCGGCATCGCGCTGATCATCCAGGAAGCGTCGGT > 4:182748/1‑144 GATTGCGCCACTGGTGGTGGCCGCGCTGGCCTGGGCGGTCGAGCGCCTGTTGATCAAACGCATCTACCACCTGCCGCACACCTTCCAGATCCTCGTCACCCTCGGCATCGCGCTGATCATCCAGGAAGCGTCGGTGC > 7:12885/1‑137 GATTGCGCCACTGGTGGTGGCCGCGCTGGCCTGGGCGGTCGAGCGCCTGTTGATCAAACGCATCTACCACCTGCCGCACACCTTCCAGATCCTCGTCACCCTCGGCATCGCGCTGATCATCCAGGAAGCGTCGGTGC < 8:12885/137‑1 CCTCGGCATCGCGCTGATCATCCAGGAAGCGTCGGTGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAAT > 1:178619/1‑141 CCTCGGCATCGCGCTGATCATCCAGGAAGCGTCGGTGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAAT < 2:178619/141‑1 TCGGCATCGCGCTGATCATCCAGGAAGCGTCGGTGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCGC > 2:190832/1‑148 TCGGCATCGCGCTGATCATCCAGGAAGCGTCGGTGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCGC > 4:251596/1‑148 TCGGCATCGCGCTGATCATCCAGGAAGCGTCGGTGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCGC > 7:192673/1‑148 AAGCGTCGGTGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCGCCAGCCAGAAGTTGCCGGTGACGGC < 1:190832/148‑1 GGCGCTGCTGATTGCGCCACTGGTGGTGGCCGCGCTGGCCTGGGCGGTCGAGCGCCTGTTGATCAAACGCATCTACCACCTGCCGCACACCTTCCAGATCCTCGTCACCCTCGGCATCGCGCTGATCATCCAGGAAGCGTCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/724442‑724297‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCGCCAGCCAGAAGTTGCCGGTGACGGC > NC_002947/724330‑724465 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |